Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 MIR335-201ENST00000362173 94 ntBASIC5.52□□□□□ -1.53
MSX1P28360 Y_RNA.105-201ENST00000363182 111 ntBASIC5.52□□□□□ -1.53
MSX1P28360 Y_RNA.183-201ENST00000363882 113 ntBASIC5.52□□□□□ -1.53
MSX1P28360 Y_RNA.471-201ENST00000384312 102 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.52□□□□□ -1.53
MSX1P28360 RPL21P38-201ENST00000418090 167 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC079355.1-201ENST00000421770 223 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC245884.2-201ENST00000426257 404 ntBASIC5.52□□□□□ -1.53
MSX1P28360 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.52□□□□□ -1.53
MSX1P28360 DAP3P1-201ENST00000441522 278 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.52□□□□□ -1.53
MSX1P28360 AC091180.1-201ENST00000462104 372 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC010631.1-201ENST00000474150 156 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC124945.1-201ENST00000485133 188 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AL035690.1-201ENST00000490892 383 ntBASIC5.52□□□□□ -1.53
MSX1P28360 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.52□□□□□ -1.53
MSX1P28360 RNU4-71P-201ENST00000516258 113 ntBASIC5.52□□□□□ -1.53
MSX1P28360 IGLVIV-53-201ENST00000520107 367 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC104576.1-201ENST00000524225 88 ntBASIC5.52□□□□□ -1.53
MSX1P28360 EIF4A2P5-201ENST00000529914 499 ntBASIC5.52□□□□□ -1.53
MSX1P28360 OR10G5P-201ENST00000532733 358 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.52□□□□□ -1.53
MSX1P28360 OR1F2P-201ENST00000570470 933 ntBASIC5.52□□□□□ -1.53
MSX1P28360 MIR4675-201ENST00000577898 77 ntBASIC5.52□□□□□ -1.53
MSX1P28360 MIR4273-201ENST00000582824 84 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AC068768.2-201ENST00000602352 343 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AL355877.2-201ENST00000603670 358 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AL591516.1-201ENST00000611326 274 ntBASIC5.52□□□□□ -1.53
MSX1P28360 AP001282.2-201ENST00000616149 309 ntBASIC5.52□□□□□ -1.53
MSX1P28360 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.52□□□□□ -1.53
MSX1P28360 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.52□□□□□ -1.53
MSX1P28360 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.52□□□□□ -1.53
MSX1P28360 AL731532.1-201ENST00000623972 4236 ntBASIC5.52□□□□□ -1.53
MSX1P28360 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.52□□□□□ -1.53
MSX1P28360 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
MSX1P28360 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
MSX1P28360 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 IRF5P1-201ENST00000504852 2164 ntBASIC5.52□□□□□ -1.53
MSX1P28360 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
MSX1P28360 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
MSX1P28360 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSX1P28360 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 THAP12P9-201ENST00000503971 2360 ntBASIC5.51□□□□□ -1.53
MSX1P28360 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
MSX1P28360 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.51□□□□□ -1.53
MSX1P28360 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 RNU6-545P-201ENST00000362681 104 ntBASIC5.51□□□□□ -1.53
MSX1P28360 SNORD113-1-201ENST00000365321 69 ntBASIC5.51□□□□□ -1.53
MSX1P28360 SAR1AP2-201ENST00000392696 594 ntBASIC5.51□□□□□ -1.53
MSX1P28360 RNA5SP36-201ENST00000410197 133 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AC015977.1-201ENST00000418887 292 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 UBE2D3P2-201ENST00000424409 445 ntBASIC5.51□□□□□ -1.53
MSX1P28360 CEACAMP1-201ENST00000434624 1035 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AL161636.2-201ENST00000445179 927 ntBASIC5.51□□□□□ -1.53
MSX1P28360 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 AL162389.1-201ENST00000449233 177 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AL162739.1-201ENST00000450606 307 ntBASIC5.51□□□□□ -1.53
MSX1P28360 CEACAMP6-201ENST00000452007 574 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX1P28360 AC007967.1-201ENST00000455422 1159 ntBASIC5.51□□□□□ -1.53
MSX1P28360 RN7SL273P-201ENST00000481561 299 ntBASIC5.51□□□□□ -1.53
MSX1P28360 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX1P28360 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 AC016065.2-201ENST00000514530 444 ntBASIC5.51□□□□□ -1.53
MSX1P28360 RN7SKP67-201ENST00000515905 235 ntBASIC5.51□□□□□ -1.53
MSX1P28360 SNORA70.11-201ENST00000515987 138 ntBASIC5.51□□□□□ -1.53
MSX1P28360 SNORA70.13-201ENST00000516116 138 ntBASIC5.51□□□□□ -1.53
MSX1P28360 Y_RNA.687-201ENST00000516558 91 ntBASIC5.51□□□□□ -1.53
MSX1P28360 RNU6-255P-201ENST00000516957 105 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AC069113.1-201ENST00000517763 267 ntBASIC5.51□□□□□ -1.53
MSX1P28360 ERHP1-201ENST00000523006 310 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 AC009852.2-201ENST00000567898 485 ntBASIC5.51□□□□□ -1.53
MSX1P28360 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.51□□□□□ -1.53
MSX1P28360 AC006557.5-201ENST00000603126 811 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms