Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MIR5002-201ENST00000584713 97 ntBASIC2.18□□□□□ -2.06
HMGA1P17096 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.18□□□□□ -2.06
HMGA1P17096 AC091488.1-201ENST00000604239 660 ntBASIC2.18□□□□□ -2.06
HMGA1P17096 AL354950.1-201ENST00000614150 568 ntBASIC2.18□□□□□ -2.06
HMGA1P17096 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.18□□□□□ -2.06
HMGA1P17096 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HMGA1P17096 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.18□□□□□ -2.06
HMGA1P17096 MTND5P12-201ENST00000502851 1449 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
HMGA1P17096 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HMGA1P17096 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.17□□□□□ -2.06
HMGA1P17096 AL513477.1-202ENST00000417061 214 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 AL591806.2-201ENST00000433122 173 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 CASP3P1-201ENST00000446037 609 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.17□□□□□ -2.06
HMGA1P17096 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.17□□□□□ -2.06
HMGA1P17096 snoU13.23-201ENST00000458863 104 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.17□□□□□ -2.06
HMGA1P17096 TMEM248P1-201ENST00000510579 951 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 MTND5P4-201ENST00000514978 288 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 SEC11B-201ENST00000518383 499 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.17□□□□□ -2.06
HMGA1P17096 MIR4524B-201ENST00000581569 115 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 VN1R84P-201ENST00000593697 235 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.17□□□□□ -2.06
HMGA1P17096 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 AC005156.1-201ENST00000613371 573 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2.17□□□□□ -2.06
HMGA1P17096 MIR4278-201ENST00000636094 69 ntBASIC2.17□□□□□ -2.06
HMGA1P17096 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
HMGA1P17096 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
HMGA1P17096 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
HMGA1P17096 ZNF355P-201ENST00000427301 3216 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
HMGA1P17096 MTND4P35-201ENST00000604257 1375 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HMGA1P17096 AC003685.2-201ENST00000422795 395 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 AC009237.8-201ENST00000445492 379 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.16□□□□□ -2.06
HMGA1P17096 RN7SKP34-201ENST00000516142 244 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.16□□□□□ -2.06
HMGA1P17096 NRBF2P1-201ENST00000587407 859 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 DUXAP3-201ENST00000603616 594 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 AL121917.1-203ENST00000605534 577 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 AC067838.1-201ENST00000606064 577 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 VN1R9P-201ENST00000614184 867 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 YWHAEP7-203ENST00000622054 312 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 AC138649.5-201ENST00000637456 137 ntBASIC2.16□□□□□ -2.06
HMGA1P17096 AL356292.1-201ENST00000283110 373 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.15□□□□□ -2.07
HMGA1P17096 U8.13-201ENST00000390842 128 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC104332.2-201ENST00000429959 156 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.15□□□□□ -2.07
HMGA1P17096 HSPE1P28-201ENST00000443139 211 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.15□□□□□ -2.07
HMGA1P17096 AL445669.2-201ENST00000454425 421 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC104308.1-201ENST00000454621 333 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.15□□□□□ -2.07
HMGA1P17096 TTC39CP1-201ENST00000512513 755 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.15□□□□□ -2.07
HMGA1P17096 SNORA31.26-201ENST00000517250 137 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 MIR4716-201ENST00000579628 84 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.15□□□□□ -2.07
HMGA1P17096 AP000787.2-201ENST00000604432 568 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 Y_RNA.783-201ENST00000613546 102 ntBASIC2.15□□□□□ -2.07
HMGA1P17096 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
HMGA1P17096 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HMGA1P17096 ZNF271P-202ENST00000465539 1970 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
HMGA1P17096 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
HMGA1P17096 RNA5SP295-201ENST00000362655 121 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 MIR124-3-201ENST00000384866 87 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HMGA1P17096 SSXP9-201ENST00000417503 292 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.14□□□□□ -2.07
HMGA1P17096 USP9YP27-201ENST00000418455 438 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.14□□□□□ -2.07
HMGA1P17096 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.14□□□□□ -2.07
HMGA1P17096 VN1R96P-201ENST00000446052 858 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AC104435.1-201ENST00000483483 166 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 OR52A4P-203ENST00000498233 1014 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 HMGB3P15-201ENST00000507326 574 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 ARL4AP2-201ENST00000507378 601 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 RNU6-237P-201ENST00000515985 71 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.14□□□□□ -2.07
HMGA1P17096 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.14□□□□□ -2.07
HMGA1P17096 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.14□□□□□ -2.07
HMGA1P17096 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.14□□□□□ -2.07
HMGA1P17096 AC015712.3-201ENST00000559380 164 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AC022884.3-201ENST00000579571 248 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AC103710.2-201ENST00000609912 942 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 AC104237.2-201ENST00000612456 443 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HMGA1P17096 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HMGA1P17096 AC006378.2-201ENST00000623178 2476 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HMGA1P17096 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.14□□□□□ -2.07
HMGA1P17096 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
HMGA1P17096 AC244517.1-201ENST00000606030 2086 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms