Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC010881.1-201ENST00000433830 235 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 YWHAZP7-201ENST00000436906 631 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 AL445567.1-201ENST00000439121 144 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MTCYBP34-201ENST00000439552 670 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC092641.1-201ENST00000440229 772 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD4P09016 HMGB3P30-201ENST00000457863 606 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 RNU7-125P-201ENST00000458760 62 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MTND1P16-201ENST00000465177 898 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC084198.1-201ENST00000477747 402 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 ACTG1P13-201ENST00000486987 1043 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC105185.1-201ENST00000518705 535 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 MTCO1P47-201ENST00000523889 1271 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD4P09016 AP001189.2-201ENST00000527320 189 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AL356057.1-201ENST00000533798 831 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC090888.1-201ENST00000561335 1141 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC002400.1-201ENST00000569310 726 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC138915.2-201ENST00000569776 97 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MIR4738-201ENST00000579134 87 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 OR4K7P-201ENST00000580232 945 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD4P09016 AL031985.2-201ENST00000600955 480 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 VN1R82P-201ENST00000601481 356 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC009220.3-201ENST00000604318 586 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC106791.2-201ENST00000604680 391 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AL603755.1-201ENST00000619504 163 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AC243312.2-201ENST00000623340 601 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC007671.2-201ENST00000637344 619 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 MKKS-204ENST00000639674 192 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 AP000553.6-201ENST00000641242 118 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD4P09016 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD4P09016 AP001148.1-201ENST00000624124 2359 ntBASIC3.32□□□□□ -1.88
HOXD4P09016 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD4P09016 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
HOXD4P09016 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD4P09016 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC091152.2-201ENST00000591628 2569 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 SRP72P2-201ENST00000344851 1979 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXD4P09016 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXD4P09016 RNU6-492P-201ENST00000363035 104 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 RNU6-1243P-201ENST00000364028 107 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 RNU6-115P-201ENST00000364310 107 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 RNU6-621P-201ENST00000364752 109 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 AL590084.2-201ENST00000401481 382 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC068533.2-201ENST00000411872 306 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC092634.6-201ENST00000418558 192 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC098592.1-201ENST00000419352 333 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC090960.1-201ENST00000421072 306 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 RPP40P1-201ENST00000426762 456 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD4P09016 YWHAZP8-201ENST00000436935 731 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AL354941.1-201ENST00000438600 464 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AL590399.6-201ENST00000446396 307 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 RPL21P23-201ENST00000446654 460 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC010655.1-201ENST00000449336 292 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 NDUFA5P7-201ENST00000452914 242 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC073387.1-201ENST00000453261 709 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC006539.3-201ENST00000454258 129 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXD4P09016 TMED11P-201ENST00000479478 690 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD4P09016 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD4P09016 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD4P09016 AC016065.2-201ENST00000514530 444 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 RN7SKP83-201ENST00000516512 178 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 SNORA48.10-201ENST00000516965 160 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD4P09016 AC090877.1-201ENST00000561418 344 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 AC093519.1-201ENST00000566109 298 ntBASIC3.31□□□□□ -1.88
HOXD4P09016 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
HOXD4P09016 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms