Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
HOXA3O43365 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC092376.2-201ENST00000622621 4116 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.19□□□□□ -1.74
HOXA3O43365 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC012618.3-205ENST00000637896 1496 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 INTS6P1-201ENST00000504674 2530 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC011155.1-201ENST00000316512 456 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 U3.3-201ENST00000362986 216 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 RNU6-960P-201ENST00000364056 120 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 Y_RNA.301-201ENST00000364990 103 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 SNORD115-7-201ENST00000365306 82 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 SNORA24.1-201ENST00000384401 135 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXA3O43365 RNU6-821P-201ENST00000390995 107 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 RNA5SP56-201ENST00000410277 118 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 GPS2P1-201ENST00000411761 986 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC092447.6-201ENST00000414578 210 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 RPS7P15-201ENST00000415804 584 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 ARL5AP1-201ENST00000418991 388 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AL353729.1-201ENST00000425044 720 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 RPL7L1P10-201ENST00000427790 463 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXA3O43365 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 RPL36AP6-201ENST00000435770 321 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 PPIAP3-201ENST00000450588 505 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC079168.1-201ENST00000458741 345 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 SNORD97-201ENST00000459187 142 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC006967.1-201ENST00000467608 589 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXA3O43365 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 RN7SKP13-201ENST00000515933 244 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 RNU6-513P-201ENST00000516104 104 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 RNU6-1038P-201ENST00000516516 104 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 MTND4P7-201ENST00000523876 130 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 DEFB109D-201ENST00000529497 240 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXA3O43365 AC067852.4-201ENST00000590314 478 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC011487.3-201ENST00000593607 453 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AL133215.3-201ENST00000609801 448 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC244107.2-201ENST00000611773 76 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AP001486.3-201ENST00000615334 372 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AC025034.2-201ENST00000623264 286 ntBASIC4.19□□□□□ -1.74
HOXA3O43365 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
HOXA3O43365 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXA3O43365 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.18□□□□□ -1.74
HOXA3O43365 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXA3O43365 AC000374.1-201ENST00000434698 1745 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 AC083899.1-201ENST00000454465 3819 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
HOXA3O43365 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXA3O43365 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA3O43365 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXA3O43365 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXA3O43365 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA3O43365 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA3O43365 RN7SKP104-201ENST00000362605 328 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 RNU6-61P-201ENST00000365528 109 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXA3O43365 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA3O43365 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXA3O43365 AL109755.1-201ENST00000401791 649 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXA3O43365 PPIAP9-201ENST00000403866 498 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 MIR1250-201ENST00000408098 113 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 AL133482.1-201ENST00000415988 498 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXA3O43365 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXA3O43365 EI24P4-201ENST00000423683 1078 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.18□□□□□ -1.74
HOXA3O43365 FABP7P2-201ENST00000429946 379 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms