Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 RNU6-174P-201ENST00000410406 106 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 RPS15AP6-201ENST00000420703 385 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AL031274.1-201ENST00000450334 232 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC016027.4-201ENST00000450866 277 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 Z92846.1-201ENST00000456203 268 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC083795.1-201ENST00000491760 320 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 RNU6-1095P-201ENST00000516148 108 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 SNORA43.3-201ENST00000517240 103 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC141002.1-201ENST00000607025 279 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AL450472.3-201ENST00000615578 367 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 AC073365.1-203ENST00000641055 1992 ntBASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
LIMD1Q9UGP4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AC011504.1-201ENST00000623331 4103 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RNU6-1155P-201ENST00000363554 107 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RNU6-371P-201ENST00000364283 108 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RNU105B-201ENST00000364478 208 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RN7SKP124-201ENST00000364730 341 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RNU4-42P-201ENST00000364738 142 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RNU6-14P-201ENST00000384630 106 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 MIR135A2-201ENST00000384854 100 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 BMS1P17-202ENST00000416720 316 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AC090774.1-201ENST00000435925 246 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ACA59.1-201ENST00000515966 143 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 SNORA31.3-201ENST00000516029 96 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 HMGB3P26-201ENST00000560051 582 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 AC011626.1-201ENST00000604710 562 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 RNU6-85P-201ENST00000605989 107 ntBASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
LIMD1Q9UGP4 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 SELENOWP1-201ENST00000322792 252 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 Y_RNA.14-201ENST00000362415 103 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 Y_RNA.126-201ENST00000363382 111 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 SNORD8-201ENST00000363915 110 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 CRP-202ENST00000368110 667 ntTSL 3 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 Y_RNA.478-201ENST00000384358 107 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 MIR433-201ENST00000384837 93 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 PPP1R11P2-201ENST00000423543 382 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 BX276092.3-201ENST00000424182 230 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AL158071.1-201ENST00000430315 461 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 RPS3AP12-201ENST00000443616 753 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 EIF4A1P11-201ENST00000451239 222 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 AP000942.1-201ENST00000463969 747 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 RPL39P38-201ENST00000467018 153 ntBASIC6.22□□□□□ -1.41
LIMD1Q9UGP4 RPS27AP13-201ENST00000498403 237 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms