Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC079203.1-201ENST00000487972 404 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 LRRC6P1-201ENST00000532188 885 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AL157770.1-201ENST00000623049 439 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC109454.4-201ENST00000623411 649 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AL512506.2-201ENST00000624472 458 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC130650.2-201ENST00000618736 2403 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 RNU5E-10P-201ENST00000363506 118 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 RNA5SP387-201ENST00000364226 106 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 U3.11-201ENST00000364476 212 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 SNORA54-201ENST00000384281 123 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 MIR591-201ENST00000385290 95 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 RNU6-1300P-201ENST00000391046 108 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL138880.1-201ENST00000405824 642 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL023807.1-201ENST00000407932 359 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 RNA5SP56-201ENST00000410277 118 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 EI24P1-201ENST00000416584 867 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC092634.6-201ENST00000418558 192 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 TOMM22P1-201ENST00000418578 312 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 RPS6P14-201ENST00000425165 719 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 RAC1P8-201ENST00000427086 527 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL035410.1-201ENST00000427409 427 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 SEPT7P5-201ENST00000434048 306 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC092393.1-201ENST00000439625 742 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 HMGB3P6-201ENST00000444896 598 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC079776.3-201ENST00000450665 370 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC010301.1-201ENST00000473936 355 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC114967.1-201ENST00000504890 259 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 SNORA48.10-201ENST00000516965 160 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC092954.1-201ENST00000609121 445 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AL442067.2-201ENST00000614033 363 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC123767.1-202ENST00000620407 817 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 AC010608.3-201ENST00000625048 527 ntBASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS54Q9P1Q0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 U3.6-201ENST00000363622 211 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 RNU6-335P-201ENST00000364563 113 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 RNU6-629P-201ENST00000384061 103 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 RNU6-339P-201ENST00000384310 107 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 SNORD15B-201ENST00000384714 146 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 SNORD65.1-201ENST00000390889 71 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AL583834.1-201ENST00000406943 343 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 MTCO3P1-205ENST00000422088 832 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 MTCO1P3-201ENST00000429327 192 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 AC241584.1-201ENST00000438469 1241 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 RPL23AP16-201ENST00000441715 421 ntBASIC3.55□□□□□ -1.84
VPS54Q9P1Q0 SLC31A1P1-201ENST00000451221 567 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms