Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AP000926.3-201ENST00000497201 299 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 KLHL2P1-201ENST00000508691 521 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 RN7SKP277-201ENST00000516895 283 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 RN7SKP234-201ENST00000517173 224 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 SNORD53-201ENST00000579969 78 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC092184.1-201ENST00000625042 715 ntBASIC2.22□□□□□ -2.05
SCN3AQ9NY46 AC233263.6-201ENST00000631132 1963 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 RNU1-101P-201ENST00000391171 127 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 ELOCP11-201ENST00000436690 332 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 HSPE1P28-201ENST00000443139 211 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 ELOCP16-201ENST00000444494 332 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 PTGES3P5-201ENST00000455109 434 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 RPS15AP1-201ENST00000457423 391 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 ANXA2P1-201ENST00000505539 926 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC010486.1-201ENST00000511793 424 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 EIF4EP5-201ENST00000528228 640 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 CENPUP2-201ENST00000555897 1186 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC034268.2-201ENST00000571784 482 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AL356575.1-201ENST00000603008 283 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AL137847.3-201ENST00000611521 109 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 MIR6715A-201ENST00000615929 79 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 AC079228.1-201ENST00000624774 1049 ntBASIC2.21□□□□□ -2.06
SCN3AQ9NY46 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
SCN3AQ9NY46 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 SAR1AP2-201ENST00000392696 594 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 DNAJC19P6-201ENST00000401853 280 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL590290.1-201ENST00000405336 380 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL590103.1-201ENST00000434488 307 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL157827.1-201ENST00000447622 132 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 GAPDHP39-201ENST00000481866 979 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 XKRY-201ENST00000510392 1100 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL645944.1-201ENST00000603857 493 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 HMGN2P28-201ENST00000606102 262 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC112503.1-201ENST00000608436 391 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL590410.1-201ENST00000617925 333 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 MTND5P3-201ENST00000438536 1800 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC007064.1-201ENST00000412238 351 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL139413.1-201ENST00000421309 217 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 Z93242.1-201ENST00000427102 353 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 NEK4P1-201ENST00000433383 879 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 RPL32P28-201ENST00000443577 397 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 HMGN1P5-201ENST00000448591 263 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 CCNHP1-201ENST00000513311 678 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 RNA5SP402-201ENST00000517148 110 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.2□□□□□ -2.06
SCN3AQ9NY46 MIR3690-201ENST00000580266 75 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AL391834.1-201ENST00000609609 560 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 AC092608.2-201ENST00000624427 218 ntBASIC2.2□□□□□ -2.06
SCN3AQ9NY46 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC004925.1-201ENST00000624256 2706 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 RNA5SP126-201ENST00000365092 109 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AP000567.1-201ENST00000406413 156 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 RN7SKP32-201ENST00000410167 303 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC244098.2-201ENST00000422068 99 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 HMGB1P45-201ENST00000435986 653 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC089999.1-201ENST00000460336 374 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 RPL30P11-201ENST00000495304 339 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 SEC11B-201ENST00000518383 499 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AP002770.2-201ENST00000543613 532 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC090695.1-201ENST00000561269 1222 ntBASIC2.19□□□□□ -2.06
SCN3AQ9NY46 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms