Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
PCDH9Q9HC56 MTND4P16-201ENST00000466108 1367 ntBASIC3.87□□□□□ -1.79
PCDH9Q9HC56 AP002907.1-201ENST00000606361 1430 ntBASIC3.87□□□□□ -1.79
PCDH9Q9HC56 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 CR383658.2-201ENST00000547576 1525 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AL672167.1-206ENST00000356293 943 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RNU5F-7P-201ENST00000363696 115 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RNU6-723P-201ENST00000383973 107 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 U1.1-201ENST00000384101 164 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 MIR30B-201ENST00000384850 88 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AL391417.1-201ENST00000404100 426 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RPL23AP39-201ENST00000415533 405 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RPS3AP9-201ENST00000417027 792 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RPL31P45-201ENST00000419532 356 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AC002075.2-201ENST00000425207 252 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 LARP1BP3-201ENST00000437229 869 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 TPTE2P5-203ENST00000458118 728 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 Y_RNA.655-201ENST00000515919 96 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RN7SKP82-201ENST00000516786 223 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AC074029.1-201ENST00000552531 1044 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 MIR4637-201ENST00000582405 84 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AC073544.2-201ENST00000601155 540 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AP003117.2-201ENST00000606010 545 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 MIR6798-201ENST00000612887 67 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 AC138649.5-201ENST00000637456 137 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 ELL2P4-201ENST00000446870 1376 ntBASIC3.86□□□□□ -1.79
PCDH9Q9HC56 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
PCDH9Q9HC56 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 MIR423-201ENST00000362201 94 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 RNU6-433P-201ENST00000363216 104 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 RN7SKP280-201ENST00000364196 304 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 SNORA51.6-201ENST00000384151 125 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 RNA5SP424-201ENST00000390988 115 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 ARF4P3-201ENST00000397387 509 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 SSXP10-201ENST00000402595 565 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AMD1P2-201ENST00000412936 992 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC083875.1-201ENST00000419509 405 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 RPL7P30-201ENST00000420888 709 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 Z99497.1-201ENST00000421282 135 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 DLGAP5P1-201ENST00000430307 464 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AL831737.1-201ENST00000441288 271 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 USP9YP10-201ENST00000454868 628 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 HMGN2P7-201ENST00000456186 273 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 HMGB3P30-201ENST00000457863 606 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 RPS15AP17-201ENST00000470598 390 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 FAM172BP-201ENST00000487497 1089 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 TMEM251P1-201ENST00000503717 318 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 USP9YP5-201ENST00000511770 630 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC024909.2-201ENST00000553035 286 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC006960.3-201ENST00000561845 705 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC128687.1-201ENST00000605304 619 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC103710.4-201ENST00000609301 899 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 HULC.1-201ENST00000612720 240 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
PCDH9Q9HC56 AL390237.1-201ENST00000404226 1415 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.85□□□□□ -1.79
PCDH9Q9HC56 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
PCDH9Q9HC56 PABPC1P9-201ENST00000426076 1612 ntBASIC3.84□□□□□ -1.79
PCDH9Q9HC56 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
PCDH9Q9HC56 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
PCDH9Q9HC56 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 141.9 ms