Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.2□□□□□ -1.9
NXF3Q9H4D5 AC126544.2-201ENST00000625174 749 ntBASIC3.2□□□□□ -1.9
NXF3Q9H4D5 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.2□□□□□ -1.9
NXF3Q9H4D5 AL035425.3-201ENST00000564206 4996 ntBASIC3.2□□□□□ -1.9
NXF3Q9H4D5 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.2□□□□□ -1.9
NXF3Q9H4D5 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
NXF3Q9H4D5 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 SNORA18.3-201ENST00000384122 132 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 Y_RNA.510-201ENST00000384511 114 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC013410.2-201ENST00000422627 201 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 DUTP6-201ENST00000425573 462 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 HMGN2P20-201ENST00000437531 273 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 ARF4P4-201ENST00000439608 520 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 UBE2V1P5-201ENST00000440070 405 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 BX248409.1-201ENST00000455497 255 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 RPS4XP6-201ENST00000477670 797 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC012181.1-201ENST00000479895 423 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 RPL23AP55-201ENST00000498163 452 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC021146.5-201ENST00000503544 545 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC119751.4-201ENST00000507498 357 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC026801.2-201ENST00000515352 425 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 MIR4474-201ENST00000579189 78 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC006504.3-201ENST00000586818 523 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 BNIP3P39-201ENST00000601077 554 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AP002802.2-201ENST00000605877 235 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC097504.2-201ENST00000608088 454 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AC009269.6-201ENST00000621778 588 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 AL109659.3-201ENST00000624985 950 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 MTCO1P6-201ENST00000481192 1384 ntBASIC3.19□□□□□ -1.9
NXF3Q9H4D5 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NXF3Q9H4D5 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC004972.1-201ENST00000623934 2209 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 U6.112-201ENST00000384129 70 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 SNORA48.8-201ENST00000391324 134 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 DSTNP4-201ENST00000399472 474 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 VDAC1P3-201ENST00000434069 851 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AL050341.1-201ENST00000447743 313 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 OR51B8P-201ENST00000449892 769 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 RPL23AP15-201ENST00000450202 459 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 HMGB1P38-201ENST00000490557 577 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 RNF138P1-201ENST00000502765 546 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC026414.1-201ENST00000504046 698 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 KCTD9P5-201ENST00000504141 1170 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC069306.1-201ENST00000507006 843 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 HIGD1AP13-201ENST00000509878 289 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 CYCSP39-201ENST00000565821 309 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AL512427.1-201ENST00000618593 349 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AC073055.1-201ENST00000456901 1621 ntBASIC3.18□□□□□ -1.9
NXF3Q9H4D5 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
NXF3Q9H4D5 AL079305.1-201ENST00000623159 3008 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 OR5J1P-201ENST00000313544 939 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NXF3Q9H4D5 RNU5B-1-201ENST00000363286 116 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 U3.6-201ENST00000363622 211 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 SNORA5B-201ENST00000363786 132 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 RNU6-1243P-201ENST00000364028 107 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 RNU6-851P-201ENST00000384565 107 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 SFR1P1-201ENST00000403720 688 ntBASIC3.17□□□□□ -1.9
NXF3Q9H4D5 RNA5SP274-201ENST00000410484 108 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms