Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 RNF2P1-201ENST00000442955 1010 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 AC113420.1-201ENST00000507903 571 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 RNU6-352P-201ENST00000516908 107 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 OR4K7P-201ENST00000580232 945 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 AL121895.2-201ENST00000619558 447 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 AC109809.1-201ENST00000619665 545 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 AC091046.2-201ENST00000620775 665 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 CR392039.5-201ENST00000623201 510 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 MAPK10-322ENST00000641485 4530 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 MTND4P9-201ENST00000507819 1346 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 MIR135A2-201ENST00000384854 100 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 MTATP6P20-201ENST00000414147 562 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 USP9YP11-201ENST00000427537 717 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AL356535.1-201ENST00000440335 398 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 MTCO1P53-201ENST00000441633 699 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC104308.1-201ENST00000454621 333 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 UBDP1-202ENST00000457888 382 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC097493.1-201ENST00000463958 372 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AL049714.1-201ENST00000466686 347 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC011979.1-201ENST00000472300 483 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 ACTR3P3-201ENST00000480448 893 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 TXNP6-201ENST00000510190 310 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC006499.2-201ENST00000513470 337 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AP000926.4-201ENST00000527351 454 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 DNAJC8P1-201ENST00000554535 372 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AL159972.1-201ENST00000625150 448 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 AC018555.1-201ENST00000567548 1980 ntBASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CHMP4AQ9BY43 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 RPL21P17-201ENST00000397467 475 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 TPMTP2-201ENST00000414372 726 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 HSPE1P1-201ENST00000421494 318 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 DPPA2P1-201ENST00000428060 556 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 AC069499.1-201ENST00000489433 509 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 AC091163.3-201ENST00000518269 1144 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 MIR3158-1-201ENST00000583596 81 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 AC079089.3-201ENST00000603094 673 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 AL445264.1-201ENST00000621719 171 ntBASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CHMP4AQ9BY43 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 AC011460.1-201ENST00000636268 1834 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 RNU6-1027P-201ENST00000383998 107 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 TRIAP1P1-201ENST00000427062 225 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 AL445584.1-201ENST00000431451 330 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 RPS3AP46-201ENST00000448352 682 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 HMGB3P8-201ENST00000449709 577 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 AC099563.1-201ENST00000456086 418 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 AL359385.1-201ENST00000456509 365 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 SETP11-201ENST00000473027 690 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 RPL7P38-201ENST00000488396 739 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 XKRY-201ENST00000510392 1100 ntBASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.79□□□□□ -1.64
CHMP4AQ9BY43 AC026801.2-201ENST00000515352 425 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms