Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AC104662.1-201ENST00000604448 511 ntBASIC6.15□□□□□ -1.42
TRERF1Q96PN7 AL354984.3-201ENST00000604803 325 ntBASIC6.15□□□□□ -1.42
TRERF1Q96PN7 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC6.15□□□□□ -1.42
TRERF1Q96PN7 U6.101-201ENST00000637707 76 ntBASIC6.15□□□□□ -1.42
TRERF1Q96PN7 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
TRERF1Q96PN7 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
TRERF1Q96PN7 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
TRERF1Q96PN7 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AL139276.1-201ENST00000311910 1001 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 RNA5SP305-201ENST00000362665 119 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 SNORA17.1-201ENST00000362945 126 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 RNU6-984P-201ENST00000363236 109 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 SNORA62.1-201ENST00000364287 154 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 MIR105-1-201ENST00000385222 81 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 RN7SKP125-201ENST00000410481 302 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC012065.2-201ENST00000421295 375 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 EIF4EP1-201ENST00000422311 642 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC233981.1-201ENST00000423224 461 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 PSMD10P3-201ENST00000437000 448 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AL031663.1-201ENST00000437445 219 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 LINC02210-201ENST00000444561 288 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 OR1H1P-201ENST00000448731 937 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC073850.1-201ENST00000449243 255 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 RNU6-1132P-201ENST00000459214 107 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 RN7SL197P-201ENST00000466981 299 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 UBA52P3-201ENST00000491303 382 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC090136.1-201ENST00000520009 240 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 SULT1C2P1-202ENST00000562418 459 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 MIR3910-1-201ENST00000580936 111 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC105224.1-201ENST00000587055 421 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC011626.1-201ENST00000604710 562 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC008013.2-202ENST00000637965 364 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 AC112198.2-201ENST00000426589 6996 ntBASIC6.14□□□□□ -1.43
TRERF1Q96PN7 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.14□□□□□ -1.43
TRERF1Q96PN7 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC114947.2-201ENST00000565748 2125 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC104260.2-201ENST00000623551 3497 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 XPOTP1-201ENST00000443317 2398 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 SNORD113-7-201ENST00000363762 77 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 RNU6-770P-201ENST00000363929 105 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 Y_RNA.350-201ENST00000365409 98 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 DBIP1-201ENST00000401435 260 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 RPS4XP9-201ENST00000405151 780 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 NDUFS5P1-201ENST00000405668 289 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 MIR548I2-201ENST00000408348 149 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AL590762.4-201ENST00000425885 253 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 PSMA6P3-201ENST00000428242 164 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC009127.1-201ENST00000467090 155 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 RN7SL97P-201ENST00000486780 299 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 RN7SKP66-201ENST00000516681 231 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AP003497.1-201ENST00000528472 562 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 RN7SL356P-201ENST00000582228 248 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC110743.1-201ENST00000584870 478 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC008687.2-201ENST00000597865 520 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC133644.2-201ENST00000608142 540 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AP002799.1-201ENST00000623552 423 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AP005432.1-201ENST00000580891 3485 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
TRERF1Q96PN7 ABCC13-202ENST00000463099 3842 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 AC091812.1-201ENST00000432235 1948 ntBASIC6.13□□□□□ -1.43
TRERF1Q96PN7 HSPA8P18-201ENST00000439846 1928 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms