Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC012065.4-201ENST00000602445 679 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AL009028.1-201ENST00000604895 802 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 RBM11P1-201ENST00000604951 799 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 MTCO1P24-201ENST00000515438 1558 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 RN7SKP280-201ENST00000364196 304 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 RNU6-723P-201ENST00000383973 107 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 RNU6-921P-201ENST00000384361 107 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 FCF1P9-201ENST00000412546 282 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AL391219.1-201ENST00000422570 483 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 MTCYBP5-201ENST00000423752 1135 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 MTND1P28-201ENST00000435623 950 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AL645939.1-201ENST00000453429 797 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC069499.1-201ENST00000489433 509 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC110792.1-201ENST00000491826 472 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 PRELID3BP7-201ENST00000503606 469 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC109927.2-201ENST00000506416 303 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC090281.1-201ENST00000523019 276 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AL360157.1-201ENST00000565962 87 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC120057.2-201ENST00000571520 271 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC083760.1-201ENST00000589621 670 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AP001521.1-201ENST00000609150 300 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 AC006065.5-201ENST00000623427 349 ntBASIC4.72□□□□□ -1.65
VPS53Q5VIR6 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS53Q5VIR6 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
VPS53Q5VIR6 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.71□□□□□ -1.65
VPS53Q5VIR6 AC026951.1-201ENST00000559530 2459 ntBASIC4.71□□□□□ -1.65
VPS53Q5VIR6 LINC02471-203ENST00000641941 4752 ntBASIC4.71□□□□□ -1.65
VPS53Q5VIR6 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 SNRPEP3-201ENST00000338402 276 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 RNU6-213P-201ENST00000384051 104 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 RNU6-1226P-201ENST00000384317 107 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 Y_RNA.516-201ENST00000384541 124 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 CKS1BP5-201ENST00000434172 273 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MTATP6P13-201ENST00000438531 667 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 HMGB1P37-201ENST00000439613 609 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 TRGVB-201ENST00000453257 471 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 VN1R105P-201ENST00000486595 910 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC096751.1-202ENST00000502691 1067 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MTCYBP17-201ENST00000503579 789 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC026726.1-201ENST00000512859 601 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 OR5G4P-201ENST00000525251 760 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 OR6C73P-201ENST00000546432 358 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 LSM6P2-201ENST00000552208 177 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC245505.1-201ENST00000556398 224 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MTND1P15-201ENST00000579262 949 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC091805.2-201ENST00000603848 235 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AL592436.1-201ENST00000605135 558 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC107214.2-201ENST00000608204 634 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC092447.7-201ENST00000422212 1621 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 PABPC1P7-201ENST00000413177 1513 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 OR4G11P-202ENST00000642116 1414 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 DCAF13P1-201ENST00000495256 1330 ntBASIC4.71□□□□□ -1.66
VPS53Q5VIR6 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS53Q5VIR6 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.7□□□□□ -1.66
VPS53Q5VIR6 MTCO1P14-201ENST00000441695 1559 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms