Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 SPA17P1-201ENST00000416656 452 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 MTCYBP29-201ENST00000436327 1006 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 TVP23BP2-201ENST00000455082 615 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 RPL23AP49-201ENST00000492925 468 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 RNA5SP281-201ENST00000516504 135 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 MTCYBP28-201ENST00000566728 1132 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 AC012213.4-201ENST00000606457 354 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 AC104237.2-201ENST00000612456 443 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 AC002076.2-201ENST00000617362 122 ntBASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 RNU1-91P-201ENST00000364746 163 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AL513175.2-201ENST00000422071 443 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 YWHAZP7-201ENST00000436906 631 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 RPL36AP51-201ENST00000487216 318 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AC010627.1-201ENST00000503819 1294 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 VN1R9P-201ENST00000614184 867 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AP005212.4-201ENST00000614206 710 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AL353997.5-201ENST00000618886 171 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 AC048347.1-201ENST00000624621 427 ntBASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC88AQ3V6T2 RNU6-532P-201ENST00000384318 107 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 CCNB2P1-201ENST00000399411 1150 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AL158825.1-201ENST00000414735 521 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 HNRNPDLP3-201ENST00000456745 380 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 TRAV31-201ENST00000502780 342 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AC006116.7-201ENST00000590141 756 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AC011494.1-201ENST00000596454 237 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AC009501.3-201ENST00000605001 1352 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 Z99496.1-201ENST00000469424 1477 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AC114546.3-201ENST00000623582 1734 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AF127577.6-201ENST00000623352 2191 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 RPL36AP21-201ENST00000490372 323 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 RPS27P27-201ENST00000498779 255 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 MIR6766-201ENST00000622641 72 ntBASIC2.88□□□□□ -1.95
CCDC88AQ3V6T2 AL139811.1-201ENST00000424779 2299 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 SNORA64-201ENST00000384674 134 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 AC010881.1-201ENST00000433830 235 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 AC069277.2-201ENST00000454211 432 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 LINC00888-204ENST00000487386 421 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 RNU6-319P-201ENST00000516025 108 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 AC135628.1-201ENST00000568867 534 ntBASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC88AQ3V6T2 AL118496.1-201ENST00000440201 1812 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 DHFRP5-201ENST00000406944 564 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 COX6CP2-201ENST00000444980 225 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 CALM1P2-201ENST00000452941 448 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 HMGB3P30-201ENST00000457863 606 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 LARP7P4-201ENST00000481075 878 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 RN7SKP219-201ENST00000516825 296 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 AK6P1-201ENST00000540219 478 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 RPL23AP42-201ENST00000471152 471 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 AC072039.1-201ENST00000477611 581 ntBASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC88AQ3V6T2 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms