Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 Y_RNA.112-201ENST00000363250 102 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 USP9YP6-201ENST00000413550 854 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 AL390023.1-201ENST00000428836 262 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 USP9YP34-201ENST00000453983 808 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.11□□□□□ -2.07
CHD9Q3L8U1 AP001542.2-201ENST00000593141 364 ntBASIC2.11□□□□□ -2.07
CHD9Q3L8U1 AC009487.2-201ENST00000420969 6821 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 NDUFA5P6-201ENST00000542110 379 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC093010.3-201ENST00000570269 15214 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC022336.2-201ENST00000568966 2538 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 SNORA51.4-201ENST00000364993 124 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 CBWD4P-201ENST00000445695 655 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 MOB1AP2-201ENST00000446060 614 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 DNAJC19P9-201ENST00000555084 351 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 AC073387.2-201ENST00000604797 784 ntBASIC2.1□□□□□ -2.07
CHD9Q3L8U1 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CHD9Q3L8U1 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.09□□□□□ -2.07
CHD9Q3L8U1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AP000275.1-201ENST00000411943 390 ntBASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AC010546.1-201ENST00000569391 485 ntBASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AC010872.1-201ENST00000624225 675 ntBASIC2.09□□□□□ -2.07
CHD9Q3L8U1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.09□□□□□ -2.07
CHD9Q3L8U1 PWAR6-201ENST00000552334 4618 ntBASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AL109809.4-201ENST00000603520 2185 ntBASIC2.09□□□□□ -2.07
CHD9Q3L8U1 AC004965.1-201ENST00000413033 213 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 AC017078.1-201ENST00000416146 368 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 AC009237.2-201ENST00000421358 284 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.09□□□□□ -2.08
CHD9Q3L8U1 AC105918.1-201ENST00000474399 838 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 AL163540.1-201ENST00000485382 386 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 MIR5089-201ENST00000580047 84 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 AC006116.7-201ENST00000590141 756 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
CHD9Q3L8U1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
CHD9Q3L8U1 AC000123.3-201ENST00000624029 4975 ntBASIC2.09□□□□□ -2.08
CHD9Q3L8U1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CHD9Q3L8U1 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.08
CHD9Q3L8U1 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC019129.1-201ENST00000403786 261 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 RPL36AP6-201ENST00000435770 321 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 IGLV3-17-201ENST00000519099 244 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AP000790.1-201ENST00000528891 737 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 RPP40P2-201ENST00000603596 712 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 MIR6132-201ENST00000622083 109 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 MIR6733-201ENST00000635723 61 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 RNU1-51P-201ENST00000365345 176 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AL445685.2-201ENST00000422551 342 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AP000852.1-201ENST00000472460 573 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 VWA8P1-201ENST00000510889 176 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC092436.3-201ENST00000511788 257 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AL021407.1-201ENST00000404531 386 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC092851.1-201ENST00000535964 478 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 WISP1-OT1-201ENST00000602893 642 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC025946.2-201ENST00000603398 234 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 AC069234.5-201ENST00000611056 416 ntBASIC2.08□□□□□ -2.08
CHD9Q3L8U1 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CHD9Q3L8U1 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
CHD9Q3L8U1 RNY1P14-201ENST00000384426 108 ntBASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AC234781.4-201ENST00000419384 244 ntBASIC2.07□□□□□ -2.08
CHD9Q3L8U1 SDCBPP3-201ENST00000419629 891 ntBASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.07□□□□□ -2.08
CHD9Q3L8U1 HMGB1P31-201ENST00000437242 427 ntBASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AC009237.8-201ENST00000445492 379 ntBASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AC140059.1-201ENST00000489238 361 ntBASIC2.07□□□□□ -2.08
CHD9Q3L8U1 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.07□□□□□ -2.08
CHD9Q3L8U1 AC120053.1-201ENST00000607706 736 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 155.9 ms