Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA1P49639 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC011005.3-201ENST00000491624 395 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC104164.2-201ENST00000496953 495 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 MTND2P33-201ENST00000506452 1031 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC022447.3-201ENST00000506865 495 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 RN7SKP234-201ENST00000517173 224 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC022790.1-201ENST00000522872 204 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC245505.1-201ENST00000556398 224 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA1P49639 UBE2FP2-201ENST00000566646 462 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA1P49639 MIR4737-201ENST00000583979 81 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC005771.1-201ENST00000585581 349 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC007566.2-201ENST00000603642 413 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AL009028.1-201ENST00000604895 802 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AL445222.1-201ENST00000607259 628 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC099778.2-201ENST00000610904 211 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC008250.2-201ENST00000615261 205 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC092326.2-201ENST00000624772 1561 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 CCT4P2-201ENST00000233836 1548 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA1P49639 AC027514.1-201ENST00000588561 1603 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 AL356473.1-201ENST00000406203 1408 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HOXA1P49639 RNU6-989P-201ENST00000362756 107 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 Y_RNA.493-201ENST00000384422 102 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 MIR659-201ENST00000384963 97 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 MIR550A3-201ENST00000390735 95 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 RNA5SP332-201ENST00000391063 115 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 MIR1305-201ENST00000408300 86 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 MTATP6P27-201ENST00000416987 621 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 RPL21P32-201ENST00000419877 477 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 COX6CP17-201ENST00000421389 185 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 EIF1P3-201ENST00000423841 334 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXA1P49639 PSMA2P3-201ENST00000429685 675 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 C8orf59P1-201ENST00000429930 303 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC109583.1-201ENST00000432156 268 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC006466.1-201ENST00000438721 289 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC092641.1-201ENST00000440229 772 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC244505.5-201ENST00000443639 207 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXA1P49639 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 RPL35AP15-201ENST00000468042 339 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC092324.1-201ENST00000468671 324 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 SNRPGP3-201ENST00000469405 227 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC087312.1-201ENST00000471411 480 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC006517.1-201ENST00000480485 328 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC108145.1-201ENST00000503770 153 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA1P49639 AC010460.1-201ENST00000507087 466 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 NDUFB4P2-201ENST00000509515 391 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXA1P49639 RN7SKP82-201ENST00000516786 223 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 PAICSP4-201ENST00000517543 1253 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 DUXAP2-201ENST00000519198 589 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AP001781.1-201ENST00000530977 207 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC009063.1-201ENST00000563342 702 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC010546.1-201ENST00000569391 485 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC007687.1-201ENST00000602704 304 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AL136363.2-201ENST00000604173 851 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC112187.2-201ENST00000604345 283 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AC112191.3-201ENST00000604371 277 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 AL049539.1-201ENST00000611964 459 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC018755.4-201ENST00000619715 454 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXA1P49639 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXA1P49639 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA1P49639 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA1P49639 AF127577.6-201ENST00000623352 2191 ntBASIC3.48□□□□□ -1.85
HOXA1P49639 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXA1P49639 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms