Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC055855.1-201ENST00000489563 579 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC020893.1-201ENST00000502452 580 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC108475.1-201ENST00000507880 950 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 RN7SKP122-201ENST00000515923 296 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 Vault.3-201ENST00000516676 95 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 MTND1P35-201ENST00000526739 508 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AP003497.1-201ENST00000528472 562 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 OR4P1P-201ENST00000530808 1136 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 FKBP1BP1-201ENST00000553366 325 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD3P31249 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC136624.4-201ENST00000573044 370 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC090615.1-201ENST00000577519 154 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC023575.1-201ENST00000580510 358 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC020910.2-201ENST00000603635 610 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC007566.2-201ENST00000603642 413 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AL009028.1-201ENST00000604895 802 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AL356218.2-201ENST00000605264 187 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC010680.4-201ENST00000605334 543 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 SSX9-202ENST00000608568 580 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXD3P31249 AC069234.5-201ENST00000611056 416 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC006338.1-201ENST00000618453 749 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC112204.3-201ENST00000623822 332 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC091925.2-201ENST00000625059 256 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 CR381572.1-201ENST00000625098 102 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD3P31249 AL596275.2-204ENST00000641628 552 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 AL596275.2-206ENST00000641957 626 ntBASIC3.61□□□□□ -1.83
HOXD3P31249 FAP-203ENST00000443424 2598 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD3P31249 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD3P31249 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD3P31249 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD3P31249 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HOXD3P31249 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD3P31249 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD3P31249 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC017104.4-201ENST00000636283 1592 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD3P31249 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC011978.2-201ENST00000569835 2054 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD3P31249 Y_RNA.295-201ENST00000364918 102 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 MIR129-1-201ENST00000384972 72 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC068050.1-201ENST00000394891 380 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AP000580.1-201ENST00000404439 358 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 MIR1193-201ENST00000408109 78 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AMD1P2-201ENST00000412936 992 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 JKAMPP1-201ENST00000413804 919 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 RPL31P2-201ENST00000413849 377 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 CKS1BP6-201ENST00000424932 240 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 TIMM9P3-201ENST00000428659 274 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 OR51AB1P-201ENST00000429046 620 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 USP9YP15-201ENST00000442391 422 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 MTND2P24-201ENST00000453434 806 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC104308.1-201ENST00000454621 333 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 RNA5SP103-201ENST00000459503 118 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC023598.1-201ENST00000472521 361 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 ALG13-211ENST00000473389 693 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 FCF1P3-201ENST00000496394 590 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD3P31249 HMGB3P16-201ENST00000508037 287 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD3P31249 NPM1P41-201ENST00000512920 831 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC026402.1-201ENST00000513642 170 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 HIGD1AP3-201ENST00000515857 278 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 RNU6-27P-201ENST00000516146 107 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD3P31249 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC118273.2-201ENST00000532092 465 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 AL512360.1-201ENST00000555346 234 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD3P31249 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD3P31249 MIR1254-2-201ENST00000579553 63 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC069061.3-201ENST00000582254 823 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD3P31249 AC004853.1-201ENST00000604902 698 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AL136363.1-201ENST00000605349 337 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 LARP7P1-201ENST00000605576 316 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC068831.8-201ENST00000620171 435 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC092794.2-201ENST00000620933 563 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 AC139792.3-201ENST00000623525 224 ntBASIC3.6□□□□□ -1.83
HOXD3P31249 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms