Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL5A3P25940 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.74□□□□□ -1.97
COL5A3P25940 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
COL5A3P25940 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL5A3P25940 AL356292.1-201ENST00000283110 373 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A3P25940 AL353597.2-202ENST00000434901 373 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 BLNK-209ENST00000495266 440 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 RN7SKP282-201ENST00000516824 299 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 HSPE1P18-201ENST00000517602 280 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A3P25940 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.73□□□□□ -1.97
COL5A3P25940 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A3P25940 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 TPMTP1-201ENST00000592307 737 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC011494.1-201ENST00000596454 237 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A3P25940 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC2.73□□□□□ -1.97
COL5A3P25940 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A3P25940 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A3P25940 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A3P25940 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 AL592045.1-201ENST00000429867 352 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 SNRPFP2-201ENST00000440710 251 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 MTCO3P17-201ENST00000443775 513 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC124916.1-201ENST00000444020 547 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 MTND4LP12-201ENST00000448237 295 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A3P25940 RN7SKP210-201ENST00000459176 261 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A3P25940 EIF4EP5-201ENST00000528228 640 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC2.73□□□□□ -1.97
COL5A3P25940 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC2.73□□□□□ -1.97
COL5A3P25940 AC006116.7-201ENST00000590141 756 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC012531.5-201ENST00000611375 151 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.73□□□□□ -1.97
COL5A3P25940 CU459211.1-201ENST00000635667 749 ntBASIC2.73□□□□□ -1.97
COL5A3P25940 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.73□□□□□ -1.97
COL5A3P25940 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL5A3P25940 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A3P25940 WWP1P1-201ENST00000466609 2769 ntBASIC2.72□□□□□ -1.97
COL5A3P25940 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A3P25940 U8.8-201ENST00000365399 135 ntBASIC2.72□□□□□ -1.97
COL5A3P25940 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A3P25940 AL009174.1-201ENST00000426577 416 ntBASIC2.72□□□□□ -1.97
COL5A3P25940 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A3P25940 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.72□□□□□ -1.97
COL5A3P25940 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC2.72□□□□□ -1.97
COL5A3P25940 AL121839.1-201ENST00000556233 1185 ntBASIC2.72□□□□□ -1.97
COL5A3P25940 AP001542.1-201ENST00000591314 200 ntBASIC2.72□□□□□ -1.97
COL5A3P25940 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A3P25940 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.72□□□□□ -1.97
COL5A3P25940 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL5A3P25940 CUL4AP1-201ENST00000514750 1863 ntBASIC2.71□□□□□ -1.97
COL5A3P25940 SNORA48.3-201ENST00000391081 134 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 AL450338.1-201ENST00000407987 512 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL5A3P25940 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.71□□□□□ -1.98
COL5A3P25940 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC2.71□□□□□ -1.98
COL5A3P25940 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
COL5A3P25940 RNA5SP309-201ENST00000516670 106 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 RN7SKP219-201ENST00000516825 296 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 RNU6-295P-201ENST00000516901 104 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC2.71□□□□□ -1.98
COL5A3P25940 MTND5P21-201ENST00000531961 522 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 AC025260.1-201ENST00000548858 430 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.71□□□□□ -1.98
COL5A3P25940 MIR4498-201ENST00000577599 66 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 MTCO3P13-201ENST00000577757 781 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 AL451074.6-201ENST00000608512 729 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL5A3P25940 RFC1-217ENST00000639695 867 ntTSL 5 BASIC2.71□□□□□ -1.98
COL5A3P25940 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.71□□□□□ -1.98
COL5A3P25940 Y_RNA.595-201ENST00000410403 105 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC2.71□□□□□ -1.98
COL5A3P25940 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.71□□□□□ -1.98
COL5A3P25940 AC004866.2-201ENST00000438285 481 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.71□□□□□ -1.98
COL5A3P25940 AC007677.1-201ENST00000445757 515 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC2.71□□□□□ -1.98
COL5A3P25940 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.71□□□□□ -1.98
COL5A3P25940 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.71□□□□□ -1.98
COL5A3P25940 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC2.71□□□□□ -1.98
COL5A3P25940 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL5A3P25940 OR4R2P-201ENST00000530815 597 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL5A3P25940 AC004943.3-201ENST00000624116 600 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 U6.98-201ENST00000637157 84 ntBASIC2.71□□□□□ -1.98
COL5A3P25940 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL5A3P25940 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL5A3P25940 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL5A3P25940 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
COL5A3P25940 SNORA67.3-201ENST00000384366 140 ntBASIC2.7□□□□□ -1.98
COL5A3P25940 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.7□□□□□ -1.98
COL5A3P25940 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.7□□□□□ -1.98
COL5A3P25940 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.7□□□□□ -1.98
COL5A3P25940 VN1R7P-201ENST00000619242 903 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms