Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
MSH3P20585 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.69□□□□□ -1.82
MSH3P20585 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSH3P20585 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
MSH3P20585 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
MSH3P20585 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSH3P20585 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
MSH3P20585 SNORA51.6-201ENST00000384151 125 ntBASIC3.68□□□□□ -1.82
MSH3P20585 RNU6-1226P-201ENST00000384317 107 ntBASIC3.68□□□□□ -1.82
MSH3P20585 BTBD10P2-201ENST00000404779 676 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AL023807.1-201ENST00000407932 359 ntBASIC3.68□□□□□ -1.82
MSH3P20585 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 MORF4L1P6-201ENST00000418771 268 ntBASIC3.68□□□□□ -1.82
MSH3P20585 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
MSH3P20585 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.68□□□□□ -1.82
MSH3P20585 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.68□□□□□ -1.82
MSH3P20585 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.68□□□□□ -1.82
MSH3P20585 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 AC009961.3-201ENST00000449832 765 ntBASIC3.68□□□□□ -1.82
MSH3P20585 OR6C5P-201ENST00000452388 923 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.68□□□□□ -1.82
MSH3P20585 HMGN2P7-201ENST00000456186 273 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.68□□□□□ -1.82
MSH3P20585 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.68□□□□□ -1.82
MSH3P20585 RPL7P47-201ENST00000497299 556 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.68□□□□□ -1.82
MSH3P20585 AC006499.2-201ENST00000513470 337 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AC016065.2-201ENST00000514530 444 ntBASIC3.68□□□□□ -1.82
MSH3P20585 RNU1-45P-201ENST00000517191 141 ntBASIC3.68□□□□□ -1.82
MSH3P20585 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.68□□□□□ -1.82
MSH3P20585 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.68□□□□□ -1.82
MSH3P20585 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.68□□□□□ -1.82
MSH3P20585 AC135507.1-201ENST00000607214 561 ntBASIC3.68□□□□□ -1.82
MSH3P20585 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
MSH3P20585 U7.8-201ENST00000619968 63 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AC018816.2-201ENST00000621460 353 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AC006065.5-201ENST00000623427 349 ntBASIC3.68□□□□□ -1.82
MSH3P20585 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
MSH3P20585 AC231657.1-201ENST00000624313 397 ntBASIC3.68□□□□□ -1.82
MSH3P20585 AC079228.1-201ENST00000624774 1049 ntBASIC3.68□□□□□ -1.82
MSH3P20585 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSH3P20585 AL079343.1-201ENST00000572358 1771 ntBASIC3.68□□□□□ -1.82
MSH3P20585 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 ZNF833P-201ENST00000424938 1494 ntBASIC3.67□□□□□ -1.82
MSH3P20585 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
MSH3P20585 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 ELL2P4-201ENST00000446870 1376 ntBASIC3.67□□□□□ -1.82
MSH3P20585 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 Y_RNA.302-201ENST00000364997 102 ntBASIC3.67□□□□□ -1.82
MSH3P20585 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 RPL23AP39-201ENST00000415533 405 ntBASIC3.67□□□□□ -1.82
MSH3P20585 RPL36AP36-201ENST00000418616 301 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.67□□□□□ -1.82
MSH3P20585 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AL445584.1-201ENST00000431451 330 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AC007389.2-201ENST00000434630 306 ntBASIC3.67□□□□□ -1.82
MSH3P20585 NOTCH2P1-201ENST00000443481 624 ntBASIC3.67□□□□□ -1.82
MSH3P20585 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 AL359073.1-201ENST00000448036 403 ntBASIC3.67□□□□□ -1.82
MSH3P20585 PPIAP3-201ENST00000450588 505 ntBASIC3.67□□□□□ -1.82
MSH3P20585 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.67□□□□□ -1.82
MSH3P20585 TRBV26-201ENST00000456572 344 ntBASIC3.67□□□□□ -1.82
MSH3P20585 CEACAMP4-201ENST00000457676 421 ntBASIC3.67□□□□□ -1.82
MSH3P20585 UBDP1-202ENST00000457888 382 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 RNU7-170P-201ENST00000459303 61 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AC097493.1-201ENST00000463958 372 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AL672167.3-201ENST00000465951 960 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 AC007537.2-201ENST00000472093 511 ntBASIC3.67□□□□□ -1.82
MSH3P20585 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 Vault.1-201ENST00000516474 102 ntBASIC3.67□□□□□ -1.82
MSH3P20585 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.67□□□□□ -1.82
MSH3P20585 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 AC012435.1-202ENST00000568772 240 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms