Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 IGKV2D-19-201ENST00000523346 262 ntBASIC3.57□□□□□ -1.84
VIMP08670 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.57□□□□□ -1.84
VIMP08670 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.57□□□□□ -1.84
VIMP08670 OR4H12P-201ENST00000556269 907 ntBASIC3.57□□□□□ -1.84
VIMP08670 CYCSP2-201ENST00000558168 301 ntBASIC3.57□□□□□ -1.84
VIMP08670 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.57□□□□□ -1.84
VIMP08670 SNORD84-203ENST00000584275 78 ntBASIC3.57□□□□□ -1.84
VIMP08670 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.57□□□□□ -1.84
VIMP08670 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VIMP08670 AC015726.1-201ENST00000602353 681 ntBASIC3.57□□□□□ -1.84
VIMP08670 AC097478.2-201ENST00000610572 514 ntBASIC3.57□□□□□ -1.84
VIMP08670 AC006338.2-201ENST00000616864 791 ntBASIC3.57□□□□□ -1.84
VIMP08670 AC091046.2-201ENST00000620775 665 ntBASIC3.57□□□□□ -1.84
VIMP08670 AL590240.3-201ENST00000621416 943 ntBASIC3.57□□□□□ -1.84
VIMP08670 AL360181.4-201ENST00000621752 134 ntBASIC3.57□□□□□ -1.84
VIMP08670 AL356585.4-201ENST00000623078 1229 ntBASIC3.57□□□□□ -1.84
VIMP08670 AC110801.1-201ENST00000623590 212 ntBASIC3.57□□□□□ -1.84
VIMP08670 AC068787.1-201ENST00000623908 691 ntBASIC3.57□□□□□ -1.84
VIMP08670 AL645937.1-201ENST00000641739 1652 ntBASIC3.57□□□□□ -1.84
VIMP08670 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VIMP08670 AC110774.1-201ENST00000623567 2018 ntBASIC3.56□□□□□ -1.84
VIMP08670 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 AL022578.1-201ENST00000439330 1433 ntBASIC3.56□□□□□ -1.84
VIMP08670 RPL23AP57-201ENST00000332361 466 ntBASIC3.56□□□□□ -1.84
VIMP08670 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VIMP08670 U3.39-201ENST00000408569 239 ntBASIC3.56□□□□□ -1.84
VIMP08670 RNA5SP129-201ENST00000410276 118 ntBASIC3.56□□□□□ -1.84
VIMP08670 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.56□□□□□ -1.84
VIMP08670 TPMTP2-201ENST00000414372 726 ntBASIC3.56□□□□□ -1.84
VIMP08670 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.56□□□□□ -1.84
VIMP08670 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 FTH1P1-201ENST00000437933 532 ntBASIC3.56□□□□□ -1.84
VIMP08670 AC009969.1-201ENST00000438726 172 ntBASIC3.56□□□□□ -1.84
VIMP08670 NUTF2P3-201ENST00000448540 384 ntBASIC3.56□□□□□ -1.84
VIMP08670 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.56□□□□□ -1.84
VIMP08670 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 AL353691.1-201ENST00000451332 387 ntBASIC3.56□□□□□ -1.84
VIMP08670 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.56□□□□□ -1.84
VIMP08670 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.56□□□□□ -1.84
VIMP08670 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 RPL21P104-201ENST00000464143 478 ntBASIC3.56□□□□□ -1.84
VIMP08670 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.56□□□□□ -1.84
VIMP08670 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.56□□□□□ -1.84
VIMP08670 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 KLHL2P1-201ENST00000508691 521 ntBASIC3.56□□□□□ -1.84
VIMP08670 MTCO2P32-201ENST00000514865 403 ntBASIC3.56□□□□□ -1.84
VIMP08670 SNORA31.9-201ENST00000516429 84 ntBASIC3.56□□□□□ -1.84
VIMP08670 SNORA70.19-201ENST00000516717 90 ntBASIC3.56□□□□□ -1.84
VIMP08670 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 C1GALT1P3-201ENST00000522049 819 ntBASIC3.56□□□□□ -1.84
VIMP08670 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.56□□□□□ -1.84
VIMP08670 AC105148.1-201ENST00000604961 409 ntBASIC3.56□□□□□ -1.84
VIMP08670 AC245297.2-201ENST00000610119 565 ntBASIC3.56□□□□□ -1.84
VIMP08670 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.56□□□□□ -1.84
VIMP08670 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 MIR7641-1-201ENST00000627518 61 ntBASIC3.56□□□□□ -1.84
VIMP08670 AP000553.6-201ENST00000641242 118 ntBASIC3.56□□□□□ -1.84
VIMP08670 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VIMP08670 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 OR4G11P-202ENST00000642116 1414 ntBASIC3.55□□□□□ -1.84
VIMP08670 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 RNA5SP383-201ENST00000362934 120 ntBASIC3.55□□□□□ -1.84
VIMP08670 RNA5SP130-201ENST00000364431 114 ntBASIC3.55□□□□□ -1.84
VIMP08670 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 RNU6-952P-201ENST00000391164 108 ntBASIC3.55□□□□□ -1.84
VIMP08670 HMGB3P23-201ENST00000414981 585 ntBASIC3.55□□□□□ -1.84
VIMP08670 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.55□□□□□ -1.84
VIMP08670 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 COX6CP17-201ENST00000421389 185 ntBASIC3.55□□□□□ -1.84
VIMP08670 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 RPL7P46-201ENST00000425129 740 ntBASIC3.55□□□□□ -1.84
VIMP08670 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 AC016712.1-201ENST00000431088 378 ntBASIC3.55□□□□□ -1.84
VIMP08670 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 AC073143.1-201ENST00000436316 395 ntBASIC3.55□□□□□ -1.84
VIMP08670 Z80107.1-201ENST00000436830 412 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.55□□□□□ -1.84
VIMP08670 MTND3P1-201ENST00000441336 220 ntBASIC3.55□□□□□ -1.84
VIMP08670 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 ARPC3P5-201ENST00000448802 534 ntBASIC3.55□□□□□ -1.84
VIMP08670 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 RPL7P18-201ENST00000478965 734 ntBASIC3.55□□□□□ -1.84
VIMP08670 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.55□□□□□ -1.84
VIMP08670 MLLT10P2-201ENST00000506434 249 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms