Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RPL23AP43-201ENST00000446445 471 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AL031584.1-201ENST00000447169 754 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AL162395.1-201ENST00000457882 422 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 RNU7-180P-201ENST00000459240 63 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AC079804.1-201ENST00000461922 436 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA3O43365 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 HMGN1P28-201ENST00000521340 364 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 PTP4A1P6-201ENST00000531034 478 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 CR383656.7-201ENST00000548164 174 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXA3O43365 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 MIR4480-201ENST00000582492 71 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 BNIP3P22-201ENST00000593399 556 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AL022345.1-201ENST00000607292 135 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 uc_338.11-201ENST00000619132 160 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 uc_338.7-201ENST00000621834 124 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AC091905.4-201ENST00000623432 202 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
HOXA3O43365 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 AC135068.12-201ENST00000637370 931 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 MTND4P14-201ENST00000435799 1354 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
HOXA3O43365 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA3O43365 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXA3O43365 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXA3O43365 PABPC1P7-201ENST00000413177 1513 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 MTCO1P9-201ENST00000505577 1534 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 AC027287.1-201ENST00000553115 1453 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 RN7SKP185-201ENST00000362813 326 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 RNU6-188P-201ENST00000364207 107 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 RNU6-522P-201ENST00000364497 107 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 RNA5SP455-201ENST00000365190 119 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 RNU6-637P-201ENST00000384050 107 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 Y_RNA.493-201ENST00000384422 102 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AL359643.1-201ENST00000404109 423 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXA3O43365 GJA6P-201ENST00000415117 1042 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA3O43365 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 RPS29P10-201ENST00000439197 166 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC010655.1-201ENST00000449336 292 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 SNRPFP3-201ENST00000457792 225 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 RPS3AP41-201ENST00000462701 778 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC097484.1-201ENST00000471148 389 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC096576.1-201ENST00000489014 359 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 RPS15AP36-201ENST00000492022 382 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA3O43365 RN7SKP260-201ENST00000516907 149 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 AP005597.4-201ENST00000526762 229 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA3O43365 AL390726.5-202ENST00000564800 256 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC024619.4-201ENST00000580924 316 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 AC008638.3-201ENST00000603341 463 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AL031176.1-201ENST00000604554 466 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC103710.3-201ENST00000608157 948 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 FAM25E-202ENST00000608562 189 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXA3O43365 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 AC091953.3-201ENST00000623220 236 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA3O43365 SMG1P6-201ENST00000532337 2930 ntBASIC4.2□□□□□ -1.74
HOXA3O43365 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXA3O43365 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXA3O43365 BDP1P-201ENST00000582658 1990 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms