Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RN7SL330P-201ENST00000469709 307 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 SYPL1P1-201ENST00000473622 768 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 ST13P14-201ENST00000474095 734 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC091163.3-201ENST00000518269 1144 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC010376.1-201ENST00000522101 334 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AP001317.1-201ENST00000531194 960 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 MIR5004-201ENST00000579078 107 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC022146.1-201ENST00000595307 847 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC069431.2-201ENST00000604149 1099 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC092628.2-201ENST00000622492 339 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AC104985.3-201ENST00000623479 597 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 MIR7153-201ENST00000637758 57 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AL445984.1-201ENST00000637834 659 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 MFSD8-245ENST00000641743 948 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
VPS54Q9P1Q0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
VPS54Q9P1Q0 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.59□□□□□ -1.84
VPS54Q9P1Q0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 HMGB1P5-201ENST00000255320 642 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RNA5SP383-201ENST00000362934 120 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RNA5SP374-201ENST00000362939 125 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RNU6-251P-201ENST00000363235 104 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 SNORA38.1-201ENST00000364172 131 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC110754.1-201ENST00000399740 601 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AL121972.1-201ENST00000402023 252 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC007899.1-201ENST00000412776 775 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RPL32P35-201ENST00000415214 394 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RPL23AP69-201ENST00000431134 458 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 GTF2IP3-201ENST00000433887 494 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RPL23AP22-201ENST00000437556 453 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC093155.1-201ENST00000440164 826 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC016696.1-201ENST00000446949 318 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC125238.1-201ENST00000448842 249 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC006445.1-201ENST00000491925 405 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC096571.1-202ENST00000506634 735 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 RN7SKP289-201ENST00000517244 295 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 MIR3186-201ENST00000577404 85 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC024060.1-201ENST00000607052 494 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC092953.2-201ENST00000608000 699 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC090425.2-201ENST00000608818 501 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AL391834.2-201ENST00000609982 546 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC090116.1-201ENST00000615679 446 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 AC099506.2-201ENST00000623074 221 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 MIR3651-201ENST00000630427 90 ntBASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS54Q9P1Q0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 RNU6-492P-201ENST00000363035 104 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 RNU6-1066P-201ENST00000363573 105 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 SNORA70.4-201ENST00000365509 134 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 RNU6-805P-201ENST00000365643 106 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 MIR607-201ENST00000385241 96 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AP000567.1-201ENST00000406413 156 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 KRR1P1-201ENST00000419430 803 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AL049610.1-201ENST00000423374 372 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 RPL21P112-201ENST00000434403 463 ntBASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS54Q9P1Q0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 156.2 ms