Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 RPL23AP57-201ENST00000332361 466 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 RNU6-462P-201ENST00000362659 105 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 RNU6-356P-201ENST00000384140 107 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 RNU5A-2P-201ENST00000384337 116 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 RNU1-13P-201ENST00000384499 162 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 RNU6-878P-201ENST00000384578 110 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 RPL21P65-201ENST00000406094 466 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 HSPE1P8-201ENST00000406997 288 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC092832.1-201ENST00000422934 400 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL590103.1-201ENST00000434488 307 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 OR4C10P-201ENST00000434991 931 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 USP9YP7-201ENST00000436723 430 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC083863.1-201ENST00000438811 231 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 HSPE1P28-201ENST00000443139 211 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC002381.1-201ENST00000447049 280 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 PPIAP3-201ENST00000450588 505 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 USP9YP32-201ENST00000452432 430 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL445669.2-201ENST00000454425 421 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 DNAJC19P1-201ENST00000455312 319 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL122001.1-201ENST00000457027 370 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC010468.1-201ENST00000461022 817 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC146507.1-201ENST00000468335 354 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 OR2A20P-203ENST00000498397 1268 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC093677.1-201ENST00000514414 678 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC093853.1-201ENST00000515689 483 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 RNU6-27P-201ENST00000516146 107 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC087369.1-201ENST00000520775 996 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 OR4P1P-201ENST00000530808 1136 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL356057.1-201ENST00000533798 831 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL669831.4-202ENST00000590817 238 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 MTCYBP22-201ENST00000603788 447 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL358072.1-201ENST00000604156 575 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL034351.1-201ENST00000605288 668 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AL390208.1-201ENST00000605885 644 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC097468.3-201ENST00000607956 456 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC103710.4-201ENST00000609301 899 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC006329.2-201ENST00000611491 394 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC079684.1-201ENST00000621405 437 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC091965.5-201ENST00000624785 342 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 CR381670.1-201ENST00000624291 1693 ntBASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-1Q99801 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-1Q99801 AC090337.1-201ENST00000579651 2074 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 SNORD116-1-201ENST00000384335 95 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 Y_RNA.548-201ENST00000384656 105 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 RNU2-15P-201ENST00000410692 191 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 TPMTP3-201ENST00000411928 735 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 RPL36AP36-201ENST00000418616 301 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC083875.1-201ENST00000419509 405 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 MTCYBP24-201ENST00000420387 1106 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL117339.2-201ENST00000430475 180 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 SETP8-201ENST00000435341 628 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 ISCA1P2-201ENST00000438679 421 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 MTND2P4-201ENST00000445034 1004 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-1Q99801 HSFY6P-201ENST00000445573 403 ntBASIC3.34□□□□□ -1.87
NKX3-1Q99801 ARPC3P5-201ENST00000448802 534 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 216.6 ms