Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC112204.3-201ENST00000623822 332 ntBASIC3.98□□□□□ -1.77
NPAS1Q99742 AC007546.2-201ENST00000623996 360 ntBASIC3.98□□□□□ -1.77
NPAS1Q99742 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NPAS1Q99742 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
NPAS1Q99742 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
NPAS1Q99742 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NPAS1Q99742 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.98□□□□□ -1.77
NPAS1Q99742 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
NPAS1Q99742 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
NPAS1Q99742 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
NPAS1Q99742 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NPAS1Q99742 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NPAS1Q99742 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 OR5P1P-201ENST00000299512 925 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 RNA5SP307-201ENST00000362863 116 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 RNU6-359P-201ENST00000365466 108 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 RNU6-297P-201ENST00000384636 107 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NPAS1Q99742 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AL031779.1-201ENST00000415663 330 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.97□□□□□ -1.77
NPAS1Q99742 CYP4F29P-201ENST00000420685 446 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 MRPS18BP2-201ENST00000434310 759 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.97□□□□□ -1.77
NPAS1Q99742 H2AFZP6-201ENST00000444403 394 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.97□□□□□ -1.77
NPAS1Q99742 MTND1P3-201ENST00000484956 952 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 NPM1P41-201ENST00000512920 831 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 RAB9BP1-201ENST00000519581 626 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AP003033.1-201ENST00000527244 415 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.97□□□□□ -1.77
NPAS1Q99742 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 DEFB131E-202ENST00000602581 683 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 RNA5SP108-201ENST00000605921 117 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 RNU6-87P-201ENST00000607561 108 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC103710.1-201ENST00000610003 901 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC019193.2-201ENST00000610012 634 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 TUG1_1.1-201ENST00000610654 145 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC138749.5-201ENST00000611461 208 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC116165.2-201ENST00000616705 206 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.97□□□□□ -1.77
NPAS1Q99742 MIR6758-201ENST00000620653 63 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC011944.2-201ENST00000624440 683 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.97□□□□□ -1.77
NPAS1Q99742 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
NPAS1Q99742 AC011460.1-201ENST00000636268 1834 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AC026951.1-201ENST00000559530 2459 ntBASIC3.97□□□□□ -1.77
NPAS1Q99742 AL133412.1-201ENST00000380194 2992 ntBASIC3.96□□□□□ -1.77
NPAS1Q99742 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NPAS1Q99742 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
NPAS1Q99742 AC008725.1-201ENST00000605123 2263 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
NPAS1Q99742 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
NPAS1Q99742 RNU6-1078P-201ENST00000364522 103 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RNU5A-6P-201ENST00000384136 116 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RNU1-44P-201ENST00000384453 163 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 MIR3074-201ENST00000384885 81 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 MIR141-201ENST00000384975 95 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 MIR3065-201ENST00000390137 79 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RNU4-25P-201ENST00000410569 230 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 SNORA74C-2-201ENST00000411179 201 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 CHIAP3-201ENST00000423668 1133 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RPL18P10-201ENST00000425606 538 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RPS29P17-201ENST00000430795 166 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.96□□□□□ -1.78
NPAS1Q99742 ARPC3P1-201ENST00000437218 533 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RPL7P28-201ENST00000437739 740 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RPS24P1-201ENST00000438550 371 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.96□□□□□ -1.78
NPAS1Q99742 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NPAS1Q99742 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.96□□□□□ -1.78
NPAS1Q99742 PHBP16-201ENST00000446318 950 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 AC104308.1-201ENST00000454621 333 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 TPT1P7-201ENST00000458300 517 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RN7SL98P-201ENST00000462271 300 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 HMGB1P25-201ENST00000468402 607 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 RPL23AP41-201ENST00000484754 458 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 AL139099.1-201ENST00000497398 403 ntBASIC3.96□□□□□ -1.78
NPAS1Q99742 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms