Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 U3.36-201ENST00000408418 213 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 DPPA2P3-201ENST00000411853 655 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 ARL5AP1-201ENST00000418991 388 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC018630.2-202ENST00000422992 927 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL118520.1-201ENST00000450770 291 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.639-201ENST00000458981 102 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 RNU7-180P-201ENST00000459240 63 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL133271.1-201ENST00000538229 291 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 ELOCP31-201ENST00000540463 467 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL133153.1-201ENST00000557756 303 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC114947.2-201ENST00000565748 2125 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 MIR4703-201ENST00000577728 79 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 MIR3691-201ENST00000578066 90 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 RN7SL708P-201ENST00000580952 299 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 MIR4660-201ENST00000583549 74 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC008814.1-201ENST00000603797 406 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AL355802.3-201ENST00000607571 545 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 MTND4LP32-201ENST00000636111 270 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 SOCS5P3-201ENST00000425115 1576 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 SAGE4P-201ENST00000442271 3381 ntBASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PTCHD1Q96NR3 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AP001350.1-201ENST00000601906 1524 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 U8.4-201ENST00000363626 134 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 U3.12-201ENST00000364498 214 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.414-201ENST00000384011 101 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RNU6-1013P-201ENST00000384180 107 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC016769.2-201ENST00000414815 475 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 EI24P4-201ENST00000423683 1078 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RPL7L1P10-201ENST00000427790 463 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 GPM6BP2-201ENST00000432046 144 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AL359265.2-201ENST00000434367 631 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 GAPDHP58-201ENST00000438477 1006 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 GPM6BP1-201ENST00000446387 144 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RPL7L1P1-201ENST00000448259 785 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.631-201ENST00000459607 101 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC027575.1-201ENST00000481064 460 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RPSAP50-201ENST00000481955 852 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC068587.1-201ENST00000483613 781 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AL671862.1-201ENST00000515851 349 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RN7SKP66-201ENST00000516681 231 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 MYL12AP1-201ENST00000518490 515 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC093591.2-201ENST00000565254 3843 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC007566.2-201ENST00000603642 413 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC211433.2-201ENST00000608433 387 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC040896.1-201ENST00000613819 479 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 RPSAP73-201ENST00000614820 330 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC084781.2-201ENST00000615568 161 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 MIR6719-201ENST00000622428 87 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AL136313.1-201ENST00000624804 202 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 AC008758.3-201ENST00000507003 1829 ntBASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.88□□□□□ -1.63
PTCHD1Q96NR3 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms