Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC006028.1-201ENST00000438379 402 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 OR4G11P-201ENST00000492842 939 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC010460.2-201ENST00000509054 677 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 RPL23AP94-201ENST00000512518 302 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 MTND1P36-201ENST00000522384 936 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AP001804.3-201ENST00000525146 880 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 NDUFS5P6-201ENST00000529136 295 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 KLKP1-201ENST00000595979 403 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC068620.3-201ENST00000602749 560 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 RPL23AP92-201ENST00000603609 255 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 YPEL5P2-201ENST00000605553 359 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC008962.1-201ENST00000605729 304 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AP001521.1-201ENST00000609150 300 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC106028.5-201ENST00000610332 395 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AC006504.1-201ENST00000562493 3666 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AL353746.1-201ENST00000566293 6881 ntBASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.53□□□□□ -1.84
HDDC3Q8N4P3 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 OR5H2-201ENST00000355273 945 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 RNU6-707P-201ENST00000364647 95 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 Y_RNA.578-201ENST00000390903 88 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 RPS7P9-201ENST00000414704 586 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 PTP4A1P7-201ENST00000423476 514 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 PTGES3P1-201ENST00000439531 483 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 MTCYBP34-201ENST00000439552 670 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC093155.1-201ENST00000440164 826 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 MTCYBP42-201ENST00000444653 1130 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 RFC5P1-201ENST00000454419 874 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 ARPC3P2-201ENST00000457786 533 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC087312.1-201ENST00000471411 480 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC023598.1-201ENST00000472521 361 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC015908.1-201ENST00000478739 476 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC008427.1-201ENST00000503102 655 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC069306.1-201ENST00000507006 843 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 RNU6-1095P-201ENST00000516148 108 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 RNU6-579P-201ENST00000516879 102 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC011492.1-201ENST00000600023 315 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 Z82195.1-201ENST00000604558 398 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AL034351.1-201ENST00000605288 668 ntBASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
HDDC3Q8N4P3 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 Y_RNA.25-201ENST00000362528 102 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 UBA52P6-201ENST00000399822 382 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AL079342.2-201ENST00000403367 482 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 RN7SKP53-201ENST00000411337 315 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 BX323014.1-201ENST00000412876 237 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 SNRPEP4-201ENST00000435815 279 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AL589880.1-201ENST00000448271 287 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 RPL12P26-201ENST00000452430 487 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 RN7SL330P-201ENST00000469709 307 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 ST13P14-201ENST00000474095 734 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 UBE2DNL-203ENST00000474922 222 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 HMGN2P13-201ENST00000476476 274 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms