Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AP000926.3-201ENST00000497201 299 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
USF3Q68DE3 RNU6-548P-201ENST00000517083 115 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC1.93□□□□□ -2.1
USF3Q68DE3 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USF3Q68DE3 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.93□□□□□ -2.1
USF3Q68DE3 AC034268.2-201ENST00000571784 482 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.93□□□□□ -2.1
USF3Q68DE3 AP004247.3-201ENST00000608682 624 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AP002967.1-201ENST00000624203 539 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 MIR1291-201ENST00000627649 87 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC091152.2-201ENST00000591628 2569 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.92□□□□□ -2.1
USF3Q68DE3 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USF3Q68DE3 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USF3Q68DE3 XIAPP3-201ENST00000312918 795 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 RNA5SP88-201ENST00000365560 109 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC1.92□□□□□ -2.1
USF3Q68DE3 SNORD21-201ENST00000383953 95 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 RNA5SP213-201ENST00000391031 106 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 SNORA17.3-201ENST00000391159 129 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC1.92□□□□□ -2.1
USF3Q68DE3 AL354710.1-201ENST00000453641 246 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.92□□□□□ -2.1
USF3Q68DE3 RN7SKP210-201ENST00000459176 261 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 OR5BN1P-201ENST00000532955 829 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC1.92□□□□□ -2.1
USF3Q68DE3 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC1.92□□□□□ -2.1
USF3Q68DE3 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC1.92□□□□□ -2.1
USF3Q68DE3 AC009318.2-201ENST00000610917 651 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 AC012531.5-201ENST00000611375 151 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 VN1R7P-201ENST00000619242 903 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 AP003499.2-201ENST00000624100 483 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USF3Q68DE3 AC002543.1-201ENST00000299783 1954 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 FAM35CP-201ENST00000554755 2470 ntBASIC1.92□□□□□ -2.1
USF3Q68DE3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USF3Q68DE3 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 U8.13-201ENST00000390842 128 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.91□□□□□ -2.1
USF3Q68DE3 AL592045.1-201ENST00000429867 352 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AP001086.1-201ENST00000494882 321 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AC091917.2-201ENST00000505002 744 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.91□□□□□ -2.1
USF3Q68DE3 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 DUXAP3-201ENST00000603616 594 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.91□□□□□ -2.1
USF3Q68DE3 VN1R9P-201ENST00000614184 867 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 ATG3P1-201ENST00000419507 911 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 AC004263.1-201ENST00000479327 332 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC1.91□□□□□ -2.1
USF3Q68DE3 RN7SKP282-201ENST00000516824 299 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AC060766.3-201ENST00000591442 263 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.91□□□□□ -2.1
USF3Q68DE3 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.91□□□□□ -2.1
USF3Q68DE3 AP000787.2-201ENST00000604432 568 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AC010378.1-201ENST00000619270 362 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AL162233.1-201ENST00000620014 944 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 AL512643.1-201ENST00000635735 524 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 MIR219B-201ENST00000637023 88 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 GABPAP-201ENST00000419271 1356 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.91□□□□□ -2.1
USF3Q68DE3 AC005336.3-201ENST00000623833 2679 ntBASIC1.91□□□□□ -2.1
USF3Q68DE3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC1.91□□□□□ -2.1
USF3Q68DE3 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
USF3Q68DE3 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.9□□□□□ -2.1
USF3Q68DE3 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.9□□□□□ -2.1
USF3Q68DE3 MORF4L1P6-201ENST00000418771 268 ntBASIC1.9□□□□□ -2.1
USF3Q68DE3 AL121882.1-201ENST00000422893 417 ntBASIC1.9□□□□□ -2.1
USF3Q68DE3 HMGB1P48-201ENST00000446155 598 ntBASIC1.9□□□□□ -2.1
USF3Q68DE3 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC1.9□□□□□ -2.1
USF3Q68DE3 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC1.9□□□□□ -2.1
USF3Q68DE3 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC1.9□□□□□ -2.1
USF3Q68DE3 AL160237.3-201ENST00000604114 1013 ntBASIC1.9□□□□□ -2.1
USF3Q68DE3 AC023813.4-201ENST00000607580 580 ntBASIC1.9□□□□□ -2.1
USF3Q68DE3 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
USF3Q68DE3 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USF3Q68DE3 AC080128.1-201ENST00000474389 1917 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AC245100.2-201ENST00000454544 1679 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USF3Q68DE3 AC007390.1-201ENST00000415722 356 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC1.9□□□□□ -2.11
USF3Q68DE3 PTP4A1P1-201ENST00000420539 515 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AL034379.1-201ENST00000423216 253 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AC239798.3-201ENST00000454459 408 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 TMEM248P1-201ENST00000510579 951 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AC018630.1-201ENST00000541376 925 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USF3Q68DE3 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC1.9□□□□□ -2.11
USF3Q68DE3 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.9□□□□□ -2.11
USF3Q68DE3 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.9□□□□□ -2.11
USF3Q68DE3 AC022884.3-201ENST00000579571 248 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.9□□□□□ -2.11
USF3Q68DE3 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
USF3Q68DE3 AC016542.2-201ENST00000624201 619 ntBASIC1.9□□□□□ -2.11
USF3Q68DE3 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms