Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 RN7SL703P-201ENST00000578485 302 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AP001004.1-201ENST00000582468 324 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 NDUFA8P1-201ENST00000605525 367 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 Z99129.1-201ENST00000612510 255 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 MIR6875-201ENST00000617506 72 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AC103858.2-201ENST00000621471 543 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC005832.2-201ENST00000538921 1430 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 IPO8P1-201ENST00000455509 3109 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AL079343.1-201ENST00000572358 1771 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 RNU6-462P-201ENST00000362659 105 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 RNU6-433P-201ENST00000363216 104 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 RNU6-628P-201ENST00000410675 107 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AL953862.1-201ENST00000423016 168 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC092017.2-201ENST00000427600 362 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AL365184.2-201ENST00000431139 435 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC087650.1-201ENST00000431445 468 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC083863.1-201ENST00000438811 231 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 S100A11P1-201ENST00000477525 312 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 RPL7P24-201ENST00000493052 752 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 MTCYBP43-201ENST00000513621 740 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 IGHV3-32-201ENST00000519182 355 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 DUXAP2-201ENST00000519198 589 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC087369.1-201ENST00000520775 996 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 OR8R1P-201ENST00000543943 764 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 GTF2IP22-201ENST00000554443 182 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 YWHAQP7-201ENST00000603536 658 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC068722.2-201ENST00000618734 544 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 PABPC1P9-201ENST00000426076 1612 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS53Q5VIR6 UBE3AP2-201ENST00000429033 2259 ntBASIC4.74□□□□□ -1.65
VPS53Q5VIR6 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 MIR649-201ENST00000384843 97 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC007066.1-201ENST00000392902 381 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 MIR1193-201ENST00000408109 78 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 OR8F1P-201ENST00000425243 930 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 BMS1P19-201ENST00000433925 393 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AL356535.1-201ENST00000440335 398 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 RPL23AP33-201ENST00000442301 452 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AL121877.1-201ENST00000453704 622 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 DNAJC19P1-201ENST00000455312 319 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 TPT1P7-201ENST00000458300 517 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC013828.1-201ENST00000481845 158 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC116347.2-201ENST00000514912 523 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AL139174.1-201ENST00000531489 886 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC091516.1-201ENST00000549191 703 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 CYCSP2-201ENST00000558168 301 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS53Q5VIR6 MIR4801-201ENST00000582704 82 ntBASIC4.73□□□□□ -1.65
VPS53Q5VIR6 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms