Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RNA5SP239-201ENST00000410218 129 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 ATP5A1P2-201ENST00000412323 255 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC068533.1-201ENST00000418542 415 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 TXNL1P1-201ENST00000429528 554 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC072039.1-201ENST00000477611 581 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 RPL31P61-201ENST00000496160 376 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC111000.2-201ENST00000507775 550 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 LTV1P1-201ENST00000510683 1237 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC006499.2-201ENST00000513470 337 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC008802.1-201ENST00000519121 791 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC007424.1-203ENST00000554613 687 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 CENPUP2-201ENST00000555897 1186 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 HSPE1P3-201ENST00000559254 309 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC009101.1-201ENST00000568135 242 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 LLPHP1-201ENST00000603571 367 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AL596327.1-201ENST00000603629 213 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC124312.4-201ENST00000605533 310 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 SNORA62.6-201ENST00000606322 83 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC004223.4-201ENST00000612426 332 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 U7.8-201ENST00000619968 63 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 CYP3A51P-201ENST00000633513 256 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 AC012321.1-201ENST00000561622 1588 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 MTCO1P23-201ENST00000415223 1526 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 LINC02471-203ENST00000641941 4752 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
USP41Q3LFD5 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP41Q3LFD5 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP41Q3LFD5 RNU1-18P-201ENST00000363062 164 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 Y_RNA.560-201ENST00000384689 102 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 MIR34B-201ENST00000385076 84 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 TANK-206ENST00000406287 875 ntTSL 5 BASIC4□□□□□ -1.77
USP41Q3LFD5 RPS15AP38-201ENST00000413110 372 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4□□□□□ -1.77
USP41Q3LFD5 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4□□□□□ -1.77
USP41Q3LFD5 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4□□□□□ -1.77
USP41Q3LFD5 AC127537.2-201ENST00000439258 465 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4□□□□□ -1.77
USP41Q3LFD5 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4□□□□□ -1.77
USP41Q3LFD5 OR6C5P-201ENST00000452388 923 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 USP9YP10-201ENST00000454868 628 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 ARPC3P2-201ENST00000457786 533 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 SYPL1P1-201ENST00000473622 768 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 RPS3AP43-201ENST00000479743 781 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 FAM172BP-201ENST00000487497 1089 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 MTND1P22-201ENST00000510572 951 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 USP9YP5-201ENST00000511770 630 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 Y_RNA.688-201ENST00000516565 95 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 NARSP2-201ENST00000518524 679 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 IGHV3-32-201ENST00000519182 355 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4□□□□□ -1.77
USP41Q3LFD5 OR8L1P-201ENST00000534005 955 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC4□□□□□ -1.77
USP41Q3LFD5 AC109446.2-201ENST00000567872 497 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4□□□□□ -1.77
USP41Q3LFD5 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4□□□□□ -1.77
USP41Q3LFD5 VN1R92P-201ENST00000598511 928 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AC013444.2-201ENST00000603317 787 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 DUXAP11-201ENST00000603858 526 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AC121247.2-201ENST00000604776 136 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AC128687.2-201ENST00000609657 566 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AL354976.1-201ENST00000613843 387 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 AL031667.3-201ENST00000620124 655 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4□□□□□ -1.77
USP41Q3LFD5 ZNF734P-201ENST00000419494 1534 ntBASIC4□□□□□ -1.77
USP41Q3LFD5 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 NMD3P1-201ENST00000439704 1488 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC011477.1-204ENST00000623416 1325 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 RPL21P132-201ENST00000331267 462 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RNU6-553P-201ENST00000364047 96 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RNA5SP72-201ENST00000364442 117 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 U3.15-201ENST00000365398 212 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 MIR183-201ENST00000384958 110 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms