Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC108078.1-201ENST00000508073 725 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 MTCO3P44-201ENST00000510977 541 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 MTCYBP41-201ENST00000528913 1123 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC100770.1-201ENST00000532310 322 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC024224.1-201ENST00000538284 609 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 CENPUP2-201ENST00000555897 1186 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AL391840.1-201ENST00000571144 367 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AP000843.1-201ENST00000624880 701 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AL592182.3-201ENST00000642132 3304 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC009951.1-201ENST00000623674 2614 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 MTND5P33-201ENST00000571250 1450 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.28□□□□□ -1.73
PTCHD3Q3KNS1 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.73
PTCHD3Q3KNS1 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC008033.1-201ENST00000216407 1162 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 GNG5P1-201ENST00000255500 204 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 RNU6-1207P-201ENST00000384343 107 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 MIR3065-201ENST00000390137 79 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 MTND1P21-201ENST00000412991 285 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 RPL36AP36-201ENST00000418616 301 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 PDSS1P1-201ENST00000422953 1114 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 USP9YP18-201ENST00000425912 695 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 TIMM9P3-201ENST00000428659 274 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 OR51AB1P-201ENST00000429046 620 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC011998.1-201ENST00000433403 117 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 RPS20P32-201ENST00000456044 356 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC103987.1-201ENST00000473394 348 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 RPL23AP41-201ENST00000484754 458 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 MTND1P3-201ENST00000484956 952 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 COX7A2P2-201ENST00000505291 250 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC005798.1-201ENST00000513715 387 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 DYNLL1P4-201ENST00000549314 266 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC124947.2-202ENST00000552735 133 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 MIR3939-201ENST00000582614 106 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC079587.1-201ENST00000603846 277 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC115621.1-201ENST00000604653 858 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AL365503.1-201ENST00000605247 905 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 ARF4P1-201ENST00000605447 541 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC010149.2-201ENST00000637608 315 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 OR5H6-203ENST00000642105 978 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 MFSD8-242ENST00000641690 4199 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 AC092125.1-201ENST00000562568 1995 ntBASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.27□□□□□ -1.73
PTCHD3Q3KNS1 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 RNU6-97P-201ENST00000363387 104 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 RNY4P34-201ENST00000364779 95 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 RNU6-339P-201ENST00000384310 107 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 SNORA70E-201ENST00000384492 135 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 RPL17P50-201ENST00000396131 546 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 GSTA9P-201ENST00000406231 611 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 MIR1911-201ENST00000410783 80 ntBASIC4.26□□□□□ -1.73
PTCHD3Q3KNS1 AC078974.1-201ENST00000411597 223 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms