Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RPAP2P1-201ENST00000603626 1168 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AC079610.2-201ENST00000604818 690 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AC025754.2-201ENST00000606491 432 ntBASIC3.08□□□□□ -1.92
SHHQ15465 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SHHQ15465 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.08□□□□□ -1.92
SHHQ15465 FAM157B-203ENST00000639350 358 ntBASIC3.08□□□□□ -1.92
SHHQ15465 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
SHHQ15465 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SHHQ15465 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SHHQ15465 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
SHHQ15465 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SHHQ15465 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
SHHQ15465 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.07□□□□□ -1.92
SHHQ15465 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.07□□□□□ -1.92
SHHQ15465 RPS4XP7-201ENST00000406274 780 ntBASIC3.07□□□□□ -1.92
SHHQ15465 MTATP6P31-201ENST00000406985 692 ntBASIC3.07□□□□□ -1.92
SHHQ15465 RNU2-37P-201ENST00000410695 177 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.07□□□□□ -1.92
SHHQ15465 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.07□□□□□ -1.92
SHHQ15465 AC009963.1-201ENST00000417265 157 ntBASIC3.07□□□□□ -1.92
SHHQ15465 MTCO3P4-201ENST00000419236 787 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.07□□□□□ -1.92
SHHQ15465 ZNF965P-201ENST00000432501 817 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AL138799.3-201ENST00000438968 350 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AC112653.1-201ENST00000443851 386 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AL353718.1-201ENST00000451028 517 ntBASIC3.07□□□□□ -1.92
SHHQ15465 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.07□□□□□ -1.92
SHHQ15465 AC092185.1-201ENST00000491371 97 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AC093801.2-201ENST00000503966 1050 ntBASIC3.07□□□□□ -1.92
SHHQ15465 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.07□□□□□ -1.92
SHHQ15465 SNORA31.13-201ENST00000516624 135 ntBASIC3.07□□□□□ -1.92
SHHQ15465 RN7SKP60-201ENST00000516985 239 ntBASIC3.07□□□□□ -1.92
SHHQ15465 IGHV3-76-201ENST00000522465 295 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AP004242.1-201ENST00000533701 349 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AC092451.2-201ENST00000538746 658 ntBASIC3.07□□□□□ -1.92
SHHQ15465 CKS1BP1-201ENST00000555221 240 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.07□□□□□ -1.92
SHHQ15465 DNAJC19P3-201ENST00000594491 331 ntBASIC3.07□□□□□ -1.92
SHHQ15465 NTAN1P1-201ENST00000603150 646 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AL139022.2-201ENST00000606934 443 ntBASIC3.07□□□□□ -1.92
SHHQ15465 CR589904.2-201ENST00000612533 440 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.07□□□□□ -1.92
SHHQ15465 MIR4496-201ENST00000635896 61 ntBASIC3.07□□□□□ -1.92
SHHQ15465 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.07□□□□□ -1.92
SHHQ15465 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHHQ15465 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.07□□□□□ -1.92
SHHQ15465 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
SHHQ15465 XPOTP1-201ENST00000443317 2398 ntBASIC3.07□□□□□ -1.92
SHHQ15465 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SHHQ15465 AC010733.2-201ENST00000589496 5702 ntBASIC3.06□□□□□ -1.92
SHHQ15465 MIR30E-201ENST00000362104 92 ntBASIC3.06□□□□□ -1.92
SHHQ15465 SNORD51.1-201ENST00000365405 77 ntBASIC3.06□□□□□ -1.92
SHHQ15465 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SHHQ15465 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 Z98742.3-201ENST00000418637 326 ntBASIC3.06□□□□□ -1.92
SHHQ15465 MORF4L1P7-201ENST00000426038 703 ntBASIC3.06□□□□□ -1.92
SHHQ15465 AL591806.2-201ENST00000433122 173 ntBASIC3.06□□□□□ -1.92
SHHQ15465 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.06□□□□□ -1.92
SHHQ15465 XKRY2-201ENST00000442362 1093 ntBASIC3.06□□□□□ -1.92
SHHQ15465 NSRP1P1-201ENST00000444067 1693 ntBASIC3.06□□□□□ -1.92
SHHQ15465 AC097499.1-201ENST00000444277 208 ntBASIC3.06□□□□□ -1.92
SHHQ15465 HMGB1P48-201ENST00000446155 598 ntBASIC3.06□□□□□ -1.92
SHHQ15465 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 AL162389.1-201ENST00000449233 177 ntBASIC3.06□□□□□ -1.92
SHHQ15465 MTND2P30-201ENST00000456663 382 ntBASIC3.06□□□□□ -1.92
SHHQ15465 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.06□□□□□ -1.92
SHHQ15465 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.06□□□□□ -1.92
SHHQ15465 RPS4XP6-201ENST00000477670 797 ntBASIC3.06□□□□□ -1.92
SHHQ15465 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 AC005921.1-201ENST00000510589 286 ntBASIC3.06□□□□□ -1.92
SHHQ15465 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC3.06□□□□□ -1.92
SHHQ15465 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.06□□□□□ -1.92
SHHQ15465 AC008494.2-201ENST00000514544 370 ntBASIC3.06□□□□□ -1.92
SHHQ15465 RNU6-991P-201ENST00000516168 107 ntBASIC3.06□□□□□ -1.92
SHHQ15465 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 AC004923.2-201ENST00000529649 369 ntBASIC3.06□□□□□ -1.92
SHHQ15465 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.06□□□□□ -1.92
SHHQ15465 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.06□□□□□ -1.92
SHHQ15465 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.06□□□□□ -1.92
SHHQ15465 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SHHQ15465 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
SHHQ15465 AL136520.1-201ENST00000600311 1322 ntBASIC3.05□□□□□ -1.92
SHHQ15465 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SHHQ15465 SNORA31-201ENST00000362607 130 ntBASIC3.05□□□□□ -1.92
SHHQ15465 RNU6-1293P-201ENST00000384077 107 ntBASIC3.05□□□□□ -1.92
SHHQ15465 RNU6-883P-201ENST00000384597 107 ntBASIC3.05□□□□□ -1.92
SHHQ15465 HMGB1P10-201ENST00000395823 563 ntBASIC3.05□□□□□ -1.92
SHHQ15465 RNA5SP247-201ENST00000411181 105 ntBASIC3.05□□□□□ -1.92
SHHQ15465 FO393419.3-201ENST00000428741 282 ntBASIC3.05□□□□□ -1.92
SHHQ15465 MTND4LP14-201ENST00000429447 288 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.05□□□□□ -1.92
SHHQ15465 RPS12P18-201ENST00000442381 270 ntBASIC3.05□□□□□ -1.92
SHHQ15465 RPL23AP15-201ENST00000450202 459 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC006539.3-201ENST00000454258 129 ntBASIC3.05□□□□□ -1.92
SHHQ15465 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.05□□□□□ -1.92
SHHQ15465 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.05□□□□□ -1.92
SHHQ15465 AC104629.1-201ENST00000494226 508 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms