Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.42□□□□□ -1.86
SOX3P41225 UBE2D3P1-201ENST00000436669 444 ntBASIC3.42□□□□□ -1.86
SOX3P41225 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SOX3P41225 RPL23AP33-201ENST00000442301 452 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.42□□□□□ -1.86
SOX3P41225 VN1R34P-201ENST00000447387 883 ntBASIC3.42□□□□□ -1.86
SOX3P41225 USP9YP34-201ENST00000453983 808 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC026410.2-201ENST00000460281 156 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC097493.1-201ENST00000463958 372 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC146507.1-201ENST00000468335 354 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.42□□□□□ -1.86
SOX3P41225 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.42□□□□□ -1.86
SOX3P41225 AC093767.1-201ENST00000504523 156 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.42□□□□□ -1.86
SOX3P41225 MTND1P22-201ENST00000510572 951 ntBASIC3.42□□□□□ -1.86
SOX3P41225 TMEM248P1-201ENST00000510579 951 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.42□□□□□ -1.86
SOX3P41225 IGKV2D-23-201ENST00000518179 286 ntBASIC3.42□□□□□ -1.86
SOX3P41225 IGKV2D-36-201ENST00000518643 226 ntBASIC3.42□□□□□ -1.86
SOX3P41225 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.42□□□□□ -1.86
SOX3P41225 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.42□□□□□ -1.86
SOX3P41225 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.42□□□□□ -1.86
SOX3P41225 HSPA8P13-201ENST00000523715 472 ntBASIC3.42□□□□□ -1.86
SOX3P41225 OR5AP1P-201ENST00000529730 940 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.42□□□□□ -1.86
SOX3P41225 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.42□□□□□ -1.86
SOX3P41225 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.42□□□□□ -1.86
SOX3P41225 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.42□□□□□ -1.86
SOX3P41225 CYCSP2-201ENST00000558168 301 ntBASIC3.42□□□□□ -1.86
SOX3P41225 MIR4738-201ENST00000579134 87 ntBASIC3.42□□□□□ -1.86
SOX3P41225 MIR92B-201ENST00000607575 96 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.42□□□□□ -1.86
SOX3P41225 AL592295.2-201ENST00000612578 206 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC008121.2-201ENST00000614647 523 ntBASIC3.42□□□□□ -1.86
SOX3P41225 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.42□□□□□ -1.86
SOX3P41225 AL603755.1-201ENST00000619504 163 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.42□□□□□ -1.86
SOX3P41225 AC009318.4-201ENST00000620496 486 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AC078883.4-201ENST00000623218 367 ntBASIC3.42□□□□□ -1.86
SOX3P41225 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
SOX3P41225 CYP3A51P-201ENST00000633513 256 ntBASIC3.42□□□□□ -1.86
SOX3P41225 AL034408.1-202ENST00000636088 415 ntBASIC3.42□□□□□ -1.86
SOX3P41225 OR8B1P-202ENST00000641132 1178 ntBASIC3.42□□□□□ -1.86
SOX3P41225 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SOX3P41225 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SOX3P41225 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SOX3P41225 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.42□□□□□ -1.86
SOX3P41225 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.42□□□□□ -1.86
SOX3P41225 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SOX3P41225 MTCO1P14-201ENST00000441695 1559 ntBASIC3.42□□□□□ -1.86
SOX3P41225 MTCO1P24-201ENST00000515438 1558 ntBASIC3.42□□□□□ -1.86
SOX3P41225 MFSD8-236ENST00000641509 4050 ntBASIC3.41□□□□□ -1.86
SOX3P41225 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SOX3P41225 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SOX3P41225 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SOX3P41225 MTCO1P23-201ENST00000415223 1526 ntBASIC3.41□□□□□ -1.86
SOX3P41225 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SOX3P41225 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SOX3P41225 Y_RNA.169-201ENST00000363745 96 ntBASIC3.41□□□□□ -1.86
SOX3P41225 RNA5SP51-201ENST00000364750 119 ntBASIC3.41□□□□□ -1.86
SOX3P41225 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
SOX3P41225 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.41□□□□□ -1.86
SOX3P41225 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.41□□□□□ -1.86
SOX3P41225 RPS12P23-201ENST00000419579 400 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC069157.1-201ENST00000421749 137 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AL389915.1-201ENST00000422463 466 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AL365203.2-201ENST00000423444 196 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC234781.2-201ENST00000426370 994 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AL035410.1-201ENST00000427409 427 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.41□□□□□ -1.86
SOX3P41225 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.41□□□□□ -1.86
SOX3P41225 RPL23AP74-201ENST00000437246 471 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.41□□□□□ -1.86
SOX3P41225 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.41□□□□□ -1.86
SOX3P41225 MTATP6P26-201ENST00000445926 662 ntBASIC3.41□□□□□ -1.86
SOX3P41225 RPL29P29-201ENST00000448725 423 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.41□□□□□ -1.86
SOX3P41225 AC006480.1-201ENST00000449887 378 ntBASIC3.41□□□□□ -1.86
SOX3P41225 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.41□□□□□ -1.86
SOX3P41225 PLGLA-201ENST00000465668 449 ntBASIC3.41□□□□□ -1.86
SOX3P41225 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
SOX3P41225 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.41□□□□□ -1.86
SOX3P41225 AC026403.1-201ENST00000518938 295 ntBASIC3.41□□□□□ -1.86
SOX3P41225 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.41□□□□□ -1.86
SOX3P41225 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.41□□□□□ -1.86
SOX3P41225 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.41□□□□□ -1.86
SOX3P41225 AC008011.1-201ENST00000545989 227 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC006960.3-201ENST00000561845 705 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.41□□□□□ -1.86
SOX3P41225 AC025588.3-201ENST00000604182 274 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AL354976.1-201ENST00000613843 387 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC090116.1-201ENST00000615679 446 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AL391261.4-201ENST00000616012 481 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC079248.2-201ENST00000623779 326 ntBASIC3.41□□□□□ -1.86
SOX3P41225 AC119674.1-207ENST00000641355 633 ntBASIC3.41□□□□□ -1.86
SOX3P41225 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SOX3P41225 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SOX3P41225 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SOX3P41225 DDX43P2-201ENST00000604753 1354 ntBASIC3.4□□□□□ -1.86
SOX3P41225 ZNF734P-201ENST00000419494 1534 ntBASIC3.4□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms