Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RMST_9.1-201ENST00000619945 193 ntBASIC2.24□□□□□ -2.05
VCANP13611 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.24□□□□□ -2.05
VCANP13611 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VCANP13611 API5P2-201ENST00000397055 1498 ntBASIC2.24□□□□□ -2.05
VCANP13611 SNORA41-201ENST00000384675 132 ntBASIC2.24□□□□□ -2.05
VCANP13611 AL513175.2-201ENST00000422071 443 ntBASIC2.24□□□□□ -2.05
VCANP13611 RPS4XP11-201ENST00000446897 772 ntBASIC2.24□□□□□ -2.05
VCANP13611 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC2.24□□□□□ -2.05
VCANP13611 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.23□□□□□ -2.05
VCANP13611 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC2.23□□□□□ -2.05
VCANP13611 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 RPL31P1-201ENST00000398116 372 ntBASIC2.23□□□□□ -2.05
VCANP13611 OR52A4P-203ENST00000498233 1014 ntBASIC2.23□□□□□ -2.05
VCANP13611 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.23□□□□□ -2.05
VCANP13611 AL451074.6-201ENST00000608512 729 ntBASIC2.23□□□□□ -2.05
VCANP13611 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 MIR181B1-201ENST00000385240 110 ntBASIC2.23□□□□□ -2.05
VCANP13611 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 MED6P1-201ENST00000439659 713 ntBASIC2.23□□□□□ -2.05
VCANP13611 COX6CP2-201ENST00000444980 225 ntBASIC2.23□□□□□ -2.05
VCANP13611 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.23□□□□□ -2.05
VCANP13611 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.23□□□□□ -2.05
VCANP13611 MIR5007-201ENST00000583098 95 ntBASIC2.23□□□□□ -2.05
VCANP13611 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.23□□□□□ -2.05
VCANP13611 DCAF13P1-201ENST00000495256 1330 ntBASIC2.23□□□□□ -2.05
VCANP13611 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
VCANP13611 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC2.23□□□□□ -2.05
VCANP13611 RNA5SP37-201ENST00000365420 130 ntBASIC2.23□□□□□ -2.05
VCANP13611 RPL23AP74-201ENST00000437246 471 ntBASIC2.23□□□□□ -2.05
VCANP13611 TOMM22P6-201ENST00000465035 409 ntBASIC2.23□□□□□ -2.05
VCANP13611 RPL23AP63-201ENST00000498752 471 ntBASIC2.23□□□□□ -2.05
VCANP13611 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.23□□□□□ -2.05
VCANP13611 AL355578.1-201ENST00000607405 1328 ntBASIC2.22□□□□□ -2.05
VCANP13611 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.22□□□□□ -2.05
VCANP13611 RNU4-74P-201ENST00000411280 161 ntBASIC2.22□□□□□ -2.05
VCANP13611 PPIAP17-201ENST00000438507 471 ntBASIC2.22□□□□□ -2.05
VCANP13611 AL020991.1-201ENST00000612314 373 ntBASIC2.22□□□□□ -2.05
VCANP13611 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.22□□□□□ -2.05
VCANP13611 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.22□□□□□ -2.05
VCANP13611 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VCANP13611 AC022882.1-201ENST00000532142 501 ntBASIC2.22□□□□□ -2.05
VCANP13611 AC011604.1-201ENST00000545978 196 ntBASIC2.22□□□□□ -2.05
VCANP13611 AMZ2P1-203ENST00000565833 850 ntBASIC2.22□□□□□ -2.05
VCANP13611 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.22□□□□□ -2.05
VCANP13611 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.22□□□□□ -2.05
VCANP13611 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VCANP13611 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.22□□□□□ -2.05
VCANP13611 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC2.21□□□□□ -2.06
VCANP13611 AL162578.1-201ENST00000406202 378 ntBASIC2.21□□□□□ -2.06
VCANP13611 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.21□□□□□ -2.06
VCANP13611 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.21□□□□□ -2.06
VCANP13611 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VCANP13611 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VCANP13611 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.21□□□□□ -2.06
VCANP13611 AC092473.1-201ENST00000441098 221 ntBASIC2.21□□□□□ -2.06
VCANP13611 snoU109.4-201ENST00000458953 143 ntBASIC2.21□□□□□ -2.06
VCANP13611 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.21□□□□□ -2.06
VCANP13611 AC117532.1-201ENST00000514638 323 ntBASIC2.21□□□□□ -2.06
VCANP13611 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.21□□□□□ -2.06
VCANP13611 RNA5SP182-201ENST00000516064 82 ntBASIC2.21□□□□□ -2.06
VCANP13611 RN7SKP60-201ENST00000516985 239 ntBASIC2.21□□□□□ -2.06
VCANP13611 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.21□□□□□ -2.06
VCANP13611 AC025260.1-201ENST00000548858 430 ntBASIC2.21□□□□□ -2.06
VCANP13611 DNAJC19P9-201ENST00000555084 351 ntBASIC2.21□□□□□ -2.06
VCANP13611 AC122134.1-201ENST00000565664 1104 ntBASIC2.21□□□□□ -2.06
VCANP13611 AL512598.1-201ENST00000610158 273 ntBASIC2.21□□□□□ -2.06
VCANP13611 U7.8-201ENST00000619968 63 ntBASIC2.21□□□□□ -2.06
VCANP13611 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
VCANP13611 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
VCANP13611 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VCANP13611 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
VCANP13611 AL512633.1-201ENST00000399931 655 ntBASIC2.21□□□□□ -2.06
VCANP13611 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.21□□□□□ -2.06
VCANP13611 RNA5SP38-201ENST00000410750 119 ntBASIC2.21□□□□□ -2.06
VCANP13611 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.21□□□□□ -2.06
VCANP13611 RNA5SP476-201ENST00000516613 103 ntBASIC2.21□□□□□ -2.06
VCANP13611 RNA5SP380-201ENST00000517190 98 ntBASIC2.21□□□□□ -2.06
VCANP13611 AC090281.1-201ENST00000523019 276 ntBASIC2.21□□□□□ -2.06
VCANP13611 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.21□□□□□ -2.06
VCANP13611 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.21□□□□□ -2.06
VCANP13611 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VCANP13611 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
VCANP13611 Y_RNA.68-201ENST00000362881 102 ntBASIC2.2□□□□□ -2.06
VCANP13611 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.2□□□□□ -2.06
VCANP13611 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.2□□□□□ -2.06
VCANP13611 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.2□□□□□ -2.06
VCANP13611 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC2.2□□□□□ -2.06
VCANP13611 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VCANP13611 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VCANP13611 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VCANP13611 AL021407.1-201ENST00000404531 386 ntBASIC2.2□□□□□ -2.06
VCANP13611 FAT1P1-201ENST00000406588 507 ntBASIC2.2□□□□□ -2.06
VCANP13611 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.2□□□□□ -2.06
VCANP13611 RPL7P37-201ENST00000425095 738 ntBASIC2.2□□□□□ -2.06
VCANP13611 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
VCANP13611 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms