Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RAC1P3-201ENST00000416129 580 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL6A3P12111 RNU1-123P-201ENST00000458950 160 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 SNORA9.3-201ENST00000516383 129 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 AC245166.1-201ENST00000521012 253 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 AC092851.1-201ENST00000535964 478 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 AC245517.5-201ENST00000611529 162 ntBASIC2.3□□□□□ -2.04
COL6A3P12111 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC2.3□□□□□ -2.04
COL6A3P12111 RNU1-100P-201ENST00000365255 165 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
COL6A3P12111 RNA5SP337-201ENST00000517007 109 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC2.29□□□□□ -2.04
COL6A3P12111 AC012360.2-201ENST00000609349 391 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.29□□□□□ -2.04
COL6A3P12111 AC016717.2-201ENST00000609089 5141 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 RNA5SP107-201ENST00000411358 122 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AMD1P2-201ENST00000412936 992 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC2.29□□□□□ -2.04
COL6A3P12111 RNA5SP476-201ENST00000516613 103 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AC100870.1-201ENST00000522035 505 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 PDCL2P2-201ENST00000533651 189 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AC110741.2-201ENST00000605278 268 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 AL122125.1-201ENST00000616999 600 ntBASIC2.29□□□□□ -2.04
COL6A3P12111 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
COL6A3P12111 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
COL6A3P12111 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.29□□□□□ -2.04
COL6A3P12111 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
COL6A3P12111 VDAC1P3-201ENST00000434069 851 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 AC011604.1-201ENST00000545978 196 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.28□□□□□ -2.04
COL6A3P12111 RPL21P5-201ENST00000554662 472 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 OR4H12P-201ENST00000556269 907 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.28□□□□□ -2.04
COL6A3P12111 AL627230.5-201ENST00000619807 58 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL6A3P12111 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.28□□□□□ -2.04
COL6A3P12111 SCARNA16.3-201ENST00000516595 184 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.28□□□□□ -2.04
COL6A3P12111 MIR6733-201ENST00000635723 61 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.28□□□□□ -2.04
COL6A3P12111 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL6A3P12111 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC2.28□□□□□ -2.04
COL6A3P12111 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL6A3P12111 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
COL6A3P12111 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL6A3P12111 RNU4-74P-201ENST00000411280 161 ntBASIC2.28□□□□□ -2.04
COL6A3P12111 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.28□□□□□ -2.04
COL6A3P12111 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.05
COL6A3P12111 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.28□□□□□ -2.05
COL6A3P12111 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC2.27□□□□□ -2.05
COL6A3P12111 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL6A3P12111 MIR1183-201ENST00000408856 89 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 EI24P1-201ENST00000416584 867 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC092427.1-202ENST00000430569 476 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC098826.1-201ENST00000433943 471 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 RPS29P12-201ENST00000460178 152 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC2.27□□□□□ -2.05
COL6A3P12111 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.27□□□□□ -2.05
COL6A3P12111 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.27□□□□□ -2.05
COL6A3P12111 AL355836.1-201ENST00000555951 870 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 MIR5007-201ENST00000583098 95 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC091834.1-201ENST00000614543 472 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.27□□□□□ -2.05
COL6A3P12111 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL6A3P12111 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
COL6A3P12111 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL6A3P12111 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
COL6A3P12111 RNA5SP38-201ENST00000410750 119 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.27□□□□□ -2.05
COL6A3P12111 AL158825.1-201ENST00000414735 521 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.27□□□□□ -2.05
COL6A3P12111 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC2.27□□□□□ -2.05
COL6A3P12111 AC103968.1-201ENST00000557841 573 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 AL451074.6-201ENST00000608512 729 ntBASIC2.27□□□□□ -2.05
COL6A3P12111 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
COL6A3P12111 RN7SKP226-201ENST00000364912 300 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
COL6A3P12111 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.26□□□□□ -2.05
COL6A3P12111 AL590762.3-201ENST00000436372 640 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.26□□□□□ -2.05
COL6A3P12111 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.26□□□□□ -2.05
COL6A3P12111 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC2.26□□□□□ -2.05
COL6A3P12111 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.26□□□□□ -2.05
COL6A3P12111 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL6A3P12111 MTND5P12-201ENST00000502851 1449 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
COL6A3P12111 AL445437.1-201ENST00000623157 3087 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.26□□□□□ -2.05
COL6A3P12111 AP004217.1-201ENST00000480579 346 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 RPL23AP63-201ENST00000498752 471 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 RN7SKP43-201ENST00000516173 320 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 RNA5SP380-201ENST00000517190 98 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC2.26□□□□□ -2.05
COL6A3P12111 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC2.26□□□□□ -2.05
COL6A3P12111 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC2.26□□□□□ -2.05
COL6A3P12111 AL450489.1-201ENST00000612071 468 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms