Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD4P09016 AL365338.1-201ENST00000422282 858 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 AL159987.2-201ENST00000432754 307 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 MTND5P2-201ENST00000442927 1142 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RPS26P56-201ENST00000444468 240 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 MTCO2P25-201ENST00000447065 681 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 CYCSP35-201ENST00000451978 304 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RPS15AP1-201ENST00000457423 391 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD4P09016 BET1P1-201ENST00000482276 359 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RPL7P24-201ENST00000493052 752 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 AC105313.1-201ENST00000509121 353 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC117522.2-201ENST00000510049 657 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 TMEM248P1-201ENST00000510579 951 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC010587.2-201ENST00000511727 448 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RNU6-488P-201ENST00000515918 99 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RN7SKP31-201ENST00000516354 278 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 Y_RNA.688-201ENST00000516565 95 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RNU4-60P-201ENST00000517239 135 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 AC007991.1-201ENST00000522680 631 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 HIGD1AP10-201ENST00000527837 282 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD4P09016 AC008011.1-201ENST00000545989 227 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD4P09016 AC006960.3-201ENST00000561845 705 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 AC004223.2-201ENST00000590309 544 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD4P09016 AL163642.2-201ENST00000604722 1019 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AL137849.1-201ENST00000604767 169 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 SNORA62.6-201ENST00000606322 83 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 MIR8058-201ENST00000615737 89 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC073348.1-201ENST00000623002 331 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 MIR3974-201ENST00000637126 96 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC244258.1-201ENST00000637553 1071 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD4P09016 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD4P09016 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD4P09016 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.35□□□□□ -1.87
HOXD4P09016 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 SGO1P2-201ENST00000429458 1589 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC090337.1-201ENST00000579651 2074 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXD4P09016 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD4P09016 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD4P09016 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HOXD4P09016 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HOXD4P09016 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD4P09016 TMSB4XP8-201ENST00000402089 135 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AL391417.1-201ENST00000404100 426 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 RNU4-72P-201ENST00000410754 173 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 AL136133.1-201ENST00000413694 376 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 TMSB4XP6-201ENST00000415187 135 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC007390.1-201ENST00000415722 356 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 BOLA3P4-201ENST00000418151 400 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC009237.2-201ENST00000421358 284 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 TMSB4XP1-201ENST00000424567 135 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AL593851.1-201ENST00000426171 157 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 PSMA2P3-201ENST00000429685 675 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 RPS17P13-201ENST00000448974 407 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 Z99714.1-201ENST00000450463 807 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXD4P09016 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXD4P09016 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD4P09016 RPL7P18-201ENST00000478965 734 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 PCBP2P3-201ENST00000509726 843 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC109445.1-201ENST00000512356 383 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HOXD4P09016 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD4P09016 RANP9-201ENST00000519957 271 ntBASIC3.34□□□□□ -1.87
HOXD4P09016 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXD4P09016 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXD4P09016 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD4P09016 AC037471.2-201ENST00000564941 598 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms