Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC19.21■□□□□ 0.67
Rnf180Q3U827 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Gm37748-201ENSMUST00000194379 1140 ntBASIC19.21■□□□□ 0.67
Rnf180Q3U827 AC124751.1-201ENSMUST00000222716 1408 ntBASIC19.21■□□□□ 0.67
Rnf180Q3U827 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Gm13294-201ENSMUST00000121757 1330 ntBASIC19.21■□□□□ 0.67
Rnf180Q3U827 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Gm15693-201ENSMUST00000120470 637 ntBASIC19.2■□□□□ 0.66
Rnf180Q3U827 Gm18489-201ENSMUST00000172565 551 ntBASIC19.2■□□□□ 0.66
Rnf180Q3U827 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Gm43630-201ENSMUST00000201550 776 ntBASIC19.2■□□□□ 0.66
Rnf180Q3U827 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Rnf180Q3U827 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Gm13453-201ENSMUST00000118708 357 ntBASIC19.19■□□□□ 0.66
Rnf180Q3U827 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Rpph1-201ENSMUST00000175096 319 ntBASIC19.19■□□□□ 0.66
Rnf180Q3U827 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Rnf180Q3U827 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Gm11478-201ENSMUST00000117851 599 ntBASIC19.18■□□□□ 0.66
Rnf180Q3U827 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC19.18■□□□□ 0.66
Rnf180Q3U827 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC19.18■□□□□ 0.66
Rnf180Q3U827 AC151836.1-202ENSMUST00000226259 753 ntBASIC19.18■□□□□ 0.66
Rnf180Q3U827 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rnf180Q3U827 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gm16215-201ENSMUST00000161990 637 ntBASIC19.17■□□□□ 0.66
Rnf180Q3U827 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gm44855-201ENSMUST00000205725 362 ntBASIC19.17■□□□□ 0.66
Rnf180Q3U827 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.17■□□□□ 0.66
Rnf180Q3U827 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Rnf180Q3U827 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Gm8344-201ENSMUST00000119813 856 ntBASIC19.16■□□□□ 0.66
Rnf180Q3U827 Gm14928-201ENSMUST00000120198 477 ntBASIC19.16■□□□□ 0.66
Rnf180Q3U827 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Rnf180Q3U827 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC19.16■□□□□ 0.66
Rnf180Q3U827 AC154239.3-201ENSMUST00000226933 674 ntBASIC19.16■□□□□ 0.66
Rnf180Q3U827 AC117588.1-201ENSMUST00000228510 999 ntBASIC19.16■□□□□ 0.66
Rnf180Q3U827 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rnf180Q3U827 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms