Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col28a1Q2UY11 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Gm43183-201ENSMUST00000200632 547 ntBASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Gm4974-201ENSMUST00000209974 875 ntBASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col28a1Q2UY11 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.92■□□□□ 0.14
Col28a1Q2UY11 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col28a1Q2UY11 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.91■□□□□ 0.14
Col28a1Q2UY11 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms