Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL031320.1-201ENST00000604177 357 ntBASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 CTHRC1P1-201ENST00000605383 469 ntBASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 OR6R2P-201ENST00000609216 300 ntBASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 AL122125.1-201ENST00000616999 600 ntBASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 LYST-202ENST00000389794 12985 ntTSL 5 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 AL359922.3-201ENST00000624779 1670 ntBASIC6.3□□□□□ -1.4
CHMP3Q9Y3E7 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RNU6-522P-201ENST00000364497 107 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RNU2-39P-201ENST00000410604 198 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 BX323014.1-201ENST00000412876 237 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AF186996.5-201ENST00000418098 904 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RPL31P45-201ENST00000419532 356 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 PMCHL1-202ENST00000423102 261 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AL049745.1-201ENST00000433953 286 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC114495.1-201ENST00000441274 436 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 TRBV26-201ENST00000456572 344 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RPS29P15-201ENST00000458329 171 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AL136126.1-201ENST00000473603 402 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RN7SL591P-201ENST00000496150 292 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RN7SKP219-201ENST00000516825 296 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC018442.3-201ENST00000523025 183 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AP001804.3-201ENST00000525146 880 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC128657.1-201ENST00000549459 145 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC060771.1-201ENST00000582031 164 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 MIR3668-201ENST00000582138 75 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC105224.1-201ENST00000587055 421 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC245389.1-201ENST00000605141 529 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AC090425.1-201ENST00000610007 140 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 RBPJP2-201ENST00000618187 1444 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 AL159972.1-201ENST00000625150 448 ntBASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
CHMP3Q9Y3E7 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 DHX40P1-201ENST00000588725 1412 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 Y_RNA.395-201ENST00000383945 109 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 RNU6-196P-201ENST00000384315 107 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 RNA5SP187-201ENST00000384400 119 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AL359634.1-202ENST00000404721 284 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 SNORA77-201ENST00000408716 125 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 RPL37P18-201ENST00000411602 243 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC137499.1-201ENST00000427602 88 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AL590233.1-201ENST00000430017 456 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 TEX41-205ENST00000431734 529 ntTSL 4 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 RPL32P28-201ENST00000443577 397 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 HMGB1P15-201ENST00000453854 435 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 MTND5P22-201ENST00000458380 195 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 ST13P14-201ENST00000474095 734 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 TAF8-207ENST00000482432 556 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 RPL23AP41-201ENST00000484754 458 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC020893.1-201ENST00000502452 580 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 RNU6-273P-201ENST00000516937 96 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AP005435.4-201ENST00000529514 284 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 OR4P1P-201ENST00000530808 1136 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 EDDM3DP-201ENST00000554692 434 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 MIR3942-201ENST00000585264 109 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 DPPA3P3-201ENST00000603842 430 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AL022345.1-201ENST00000607292 135 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms