Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL161713.1-201ENST00000555538 145 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC073091.2-201ENST00000603205 907 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC012409.3-201ENST00000611343 981 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC013476.2-201ENST00000614456 459 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 MIR7154-201ENST00000620673 73 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC004009.2-201ENST00000623016 728 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC007546.2-201ENST00000623996 360 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 DCAF13P1-201ENST00000495256 1330 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC021146.4-201ENST00000309229 279 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC067945.1-201ENST00000342609 618 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RNY4P24-201ENST00000362735 96 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RNU1-130P-201ENST00000363930 160 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 Y_RNA.516-201ENST00000384541 124 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RPL31P1-201ENST00000398116 372 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC012065.2-201ENST00000421295 375 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL391219.1-201ENST00000422570 483 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 NANOGP6-201ENST00000429190 847 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RPS29P17-201ENST00000430795 166 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RPL23AP93-201ENST00000440847 484 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 HSPE1P28-201ENST00000443139 211 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 PHBP16-201ENST00000446318 950 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL033528.1-201ENST00000453780 140 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC093899.1-201ENST00000457984 376 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RPL9P33-201ENST00000484311 566 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC105137.1-201ENST00000484355 562 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC023424.2-201ENST00000493479 777 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 PARP4P3-201ENST00000510265 317 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AF213884.2-201ENST00000510417 903 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC009063.1-201ENST00000563342 702 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC067852.4-201ENST00000590314 478 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL160290.3-201ENST00000604869 165 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC109347.2-201ENST00000610220 349 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AL445567.2-201ENST00000618935 498 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 MIR6715B-201ENST00000637172 77 ntBASIC4.23□□□□□ -1.73
VPS4AQ9UN37 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS4AQ9UN37 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC090229.1-201ENST00000590983 1609 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 Y_RNA.6-201ENST00000362350 114 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 MIR554-201ENST00000384874 96 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 MIR670-201ENST00000390142 98 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 RPL32P23-201ENST00000397237 405 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 RN7SKP202-201ENST00000410439 330 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 Y_RNA.608-201ENST00000410647 95 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 SNORA74C-2-201ENST00000411179 201 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 MTCO1P17-201ENST00000411522 491 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms