Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AL122126.1-201ENST00000546905 1318 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AL731566.1-201ENST00000620490 1937 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.162-201ENST00000363683 102 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RNU1-82P-201ENST00000390851 165 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 GPS2P1-201ENST00000411761 986 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 PSMA6P3-201ENST00000428242 164 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 SRIP2-201ENST00000428470 166 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RPS17P8-201ENST00000434525 335 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RPS15AP9-201ENST00000439856 381 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 HMGB3P9-201ENST00000441799 583 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RPL7P19-201ENST00000469948 618 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC021382.1-201ENST00000483523 359 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RN7SL558P-201ENST00000497468 299 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 FTH1P24-201ENST00000503502 462 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 OR5BN1P-201ENST00000532955 829 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC087241.2-201ENST00000535801 324 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC084783.1-201ENST00000565846 910 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC093227.2-201ENST00000589357 285 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AP001429.1-201ENST00000602568 530 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC010591.1-201ENST00000603941 649 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 SAGE4P-201ENST00000442271 3381 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 AC002525.1-201ENST00000624392 1622 ntBASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC87Q9NVE4 RIOK3P1-201ENST00000418778 1528 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AP005432.1-201ENST00000580891 3485 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 FRG1CP-201ENST00000358464 769 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RNA5SP453-201ENST00000362503 119 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RNU1-64P-201ENST00000365443 163 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 MIR134-201ENST00000385258 73 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 ADAM24P-201ENST00000398655 2101 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RNU2-62P-201ENST00000410868 191 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AL354751.2-201ENST00000415471 210 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC140479.3-201ENST00000418944 1126 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RPL23AP30-201ENST00000432419 501 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 snoU13.7-201ENST00000459220 104 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AL136126.1-201ENST00000473603 402 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC078785.3-201ENST00000476607 425 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AL163973.1-201ENST00000484753 577 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC016559.2-201ENST00000510759 359 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RNU7-30P-201ENST00000516835 62 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RNU6-1220P-201ENST00000517126 108 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AP001781.1-201ENST00000530977 207 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC093027.1-201ENST00000546698 429 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 RN7SL652P-201ENST00000577769 300 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 SNORA74C-1-201ENST00000580726 201 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC060771.1-201ENST00000582031 164 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC069061.3-201ENST00000582254 823 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC105224.1-201ENST00000587055 421 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC010525.2-201ENST00000590920 195 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AC116447.1-201ENST00000613153 453 ntBASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
CCDC87Q9NVE4 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.09□□□□□ -1.44
CCDC87Q9NVE4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.09□□□□□ -1.44
CCDC87Q9NVE4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.09□□□□□ -1.44
CCDC87Q9NVE4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.09□□□□□ -1.44
CCDC87Q9NVE4 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AL450345.1-202ENST00000605741 3881 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 RNU1-130P-201ENST00000363930 160 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 MIR1-2-201ENST00000384961 85 ntBASIC6.08□□□□□ -1.44
CCDC87Q9NVE4 RNU6-332P-201ENST00000391193 108 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms