Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.46□□□□□ -1.69
CCDC140Q96MF4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC4.46□□□□□ -1.69
CCDC140Q96MF4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC140Q96MF4 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC007823.1-201ENST00000569932 1566 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.31-201ENST00000362574 102 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.197-201ENST00000364004 102 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 U3.10-201ENST00000364459 214 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RN7SKP15-201ENST00000364742 309 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RNU6-1303P-201ENST00000364841 107 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 LAP3P1-201ENST00000403648 294 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL035660.1-201ENST00000422041 222 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RPL31P12-201ENST00000422587 358 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RPL7L1P9-201ENST00000431298 745 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 NRBF2P3-201ENST00000432731 865 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RPL7P28-201ENST00000437739 740 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 HMGN1P2-201ENST00000445197 310 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 HSFY6P-201ENST00000445573 403 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RPL21P41-201ENST00000459863 264 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC058823.1-201ENST00000485315 474 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RNU6-914P-201ENST00000516749 109 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC079600.1-201ENST00000550326 297 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 MIR4260-201ENST00000583107 67 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 SNRPGP15-201ENST00000600149 222 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL138895.2-201ENST00000603019 178 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC016925.2-201ENST00000605108 242 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC116312.1-201ENST00000606841 314 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL121612.2-201ENST00000612261 482 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AL138960.1-201ENST00000613838 513 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 AC067931.1-201ENST00000624190 671 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 BMS1P21-201ENST00000634565 365 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.46□□□□□ -1.7
CCDC140Q96MF4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC140Q96MF4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ZNF285B-201ENST00000561698 1767 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 OR4G2P-202ENST00000641004 1759 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 MAPK10-338ENST00000641647 3362 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.135-201ENST00000363439 95 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 RNU6-512P-201ENST00000364438 103 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC092642.1-201ENST00000392417 425 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AL391417.1-201ENST00000404100 426 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AL139397.2-201ENST00000404529 772 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 TOMM22P1-201ENST00000418578 312 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 GNG5P5-201ENST00000420444 220 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 ATP5HP2-201ENST00000433885 485 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AF228730.2-201ENST00000438784 848 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 RNU7-152P-201ENST00000458982 64 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 RPL37P6-201ENST00000460682 294 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 RPS17P15-201ENST00000475609 349 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 RPL32P33-201ENST00000487023 394 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 DUTP1-201ENST00000493631 470 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 MTCYBP40-201ENST00000509390 1135 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC074255.1-201ENST00000511259 501 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 Y_RNA.711-201ENST00000516993 102 ntBASIC4.45□□□□□ -1.7
CCDC140Q96MF4 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC140Q96MF4 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms