Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC42Q96M95 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC42Q96M95 SNORA25.6-201ENST00000364121 118 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC42Q96M95 AL592148.1-201ENST00000413568 445 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 USP9YP20-201ENST00000419224 558 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 AC087499.2-201ENST00000432861 149 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 RPL23AP58-201ENST00000440453 469 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 RNU6-491P-201ENST00000516099 110 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 RN7SKP283-201ENST00000517197 270 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 AC019227.1-201ENST00000526902 510 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 AL009028.1-201ENST00000604895 802 ntBASIC2.81□□□□□ -1.96
CCDC42Q96M95 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC42Q96M95 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC42Q96M95 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC42Q96M95 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC42Q96M95 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC42Q96M95 RNU6-1243P-201ENST00000364028 107 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 SNORD56.5-201ENST00000364281 72 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC42Q96M95 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 Z96811.1-201ENST00000445880 108 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 AL445669.2-201ENST00000454425 421 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 AC017015.1-201ENST00000477387 286 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 SUMO1P1-201ENST00000497904 306 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 AC025459.1-201ENST00000504072 156 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 AC026427.2-201ENST00000506228 536 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 FABP5P6-201ENST00000510588 409 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 SNORA31.20-201ENST00000517111 133 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 HMGB1P41-201ENST00000520234 440 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 CIR1P1-201ENST00000524055 1133 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 RGS4-207ENST00000527809 817 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 AL121594.5-201ENST00000631724 573 ntBASIC2.8□□□□□ -1.96
CCDC42Q96M95 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.8□□□□□ -1.96
CCDC42Q96M95 MIR6073-201ENST00000352083 89 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 RNU6-891P-201ENST00000384280 111 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 RNU6-837P-201ENST00000391056 108 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 RNU4-74P-201ENST00000411280 161 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 AC010385.1-201ENST00000412374 256 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 RPS6P14-201ENST00000425165 719 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 RNF19BPX-201ENST00000426224 625 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 Z85994.2-201ENST00000434327 452 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 RPL7P29-201ENST00000437151 728 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 UBBP3-201ENST00000445497 241 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 AC104472.2-201ENST00000469035 601 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 RPL7L1P13-201ENST00000511702 739 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 SNORA31.21-201ENST00000517180 77 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 OR4G1P-201ENST00000588632 938 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 RPL12P50-201ENST00000603116 116 ntBASIC2.79□□□□□ -1.96
CCDC42Q96M95 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
CCDC42Q96M95 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC42Q96M95 MTND5P28-201ENST00000438005 1594 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC42Q96M95 SNORA14A-201ENST00000364773 135 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 MIR421-201ENST00000365696 85 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 SFR1P1-201ENST00000403720 688 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 TANK-206ENST00000406287 875 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 BX682237.1-201ENST00000415016 335 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 MTATP6P4-201ENST00000427725 675 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 RPS12P2-201ENST00000439728 269 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 RABEPKP1-201ENST00000440529 1026 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 RPS27P27-201ENST00000498779 255 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC42Q96M95 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms