Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 PTP4A1P7-201ENST00000423476 514 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 RPL7P44-201ENST00000424827 742 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC093155.1-201ENST00000440164 826 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 ATP5C1P1-201ENST00000441945 895 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 RPL21P23-201ENST00000446654 460 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC140076.1-201ENST00000449897 361 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC079776.3-201ENST00000450665 370 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 NDUFA5P7-201ENST00000452914 242 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC068724.1-201ENST00000487100 792 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC010374.2-201ENST00000512933 535 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SNORD59.2-201ENST00000516873 68 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 RNU6-711P-201ENST00000517255 106 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 HIGD1AP5-201ENST00000529959 259 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 DEFB130C-202ENST00000530001 230 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AP001317.1-201ENST00000531194 960 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC107954.1-201ENST00000565906 727 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC069431.2-201ENST00000604149 1099 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC124312.4-201ENST00000605533 310 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC091946.2-201ENST00000606105 291 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AL109620.1-201ENST00000618738 1197 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 MFSD8-245ENST00000641743 948 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 AC080100.1-201ENST00000624239 5356 ntBASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC54Q8NEL0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 RNU6-50P-201ENST00000362356 103 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 SNORA5A-201ENST00000384111 134 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 ARF4P3-201ENST00000397387 509 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 RNA5SP44-201ENST00000410446 133 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC096632.1-201ENST00000427395 310 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC104332.2-201ENST00000429959 156 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC073063.1-201ENST00000434352 607 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC127537.2-201ENST00000439258 465 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC122718.1-201ENST00000439448 744 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC115115.1-201ENST00000449927 248 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 ELOCP23-201ENST00000452014 332 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 SYPL1P1-201ENST00000473622 768 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC113420.1-201ENST00000507903 571 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC091163.3-201ENST00000518269 1144 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 IGKV2-26-201ENST00000518305 343 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC007536.1-201ENST00000533382 349 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC093227.2-201ENST00000589357 285 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AP003973.1-201ENST00000604639 691 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC073657.2-201ENST00000605661 303 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC018645.2-201ENST00000609151 472 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AL157770.1-201ENST00000623049 439 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC068620.4-201ENST00000636730 1182 ntBASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC54Q8NEL0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 Z83843.1-201ENST00000604070 3685 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 MIR218-2-201ENST00000385006 110 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AL121972.1-201ENST00000402023 252 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AL121978.1-201ENST00000402778 359 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AL450338.1-201ENST00000407987 512 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 RNU4-78P-201ENST00000410940 126 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms