Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 MTCO1P18-201ENST00000455518 1419 ntBASIC3.17□□□□□ -1.9
HOXA9P31269 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA9P31269 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXA9P31269 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA9P31269 AL353746.1-201ENST00000566293 6881 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC002546.1-201ENST00000588041 2504 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA9P31269 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HOXA9P31269 RPL22P22-201ENST00000395439 379 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 MIR1303-201ENST00000408625 86 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC073310.1-201ENST00000423226 1033 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 RPL21P40-201ENST00000428586 483 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 FO393414.1-201ENST00000428697 1184 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA9P31269 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA9P31269 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA9P31269 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA9P31269 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA9P31269 RNU1-61P-201ENST00000516107 151 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA9P31269 AC027309.2-201ENST00000520566 192 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA9P31269 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA9P31269 AC104115.2-201ENST00000523026 687 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA9P31269 TMF1P1-201ENST00000576058 373 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 RN7SL622P-201ENST00000585292 275 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA9P31269 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA9P31269 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA9P31269 AP003485.2-201ENST00000623636 610 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC080188.3-201ENST00000624842 748 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AL138960.2-201ENST00000625145 535 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 AC139713.2-210ENST00000641741 992 ntBASIC3.16□□□□□ -1.9
HOXA9P31269 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA9P31269 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA9P31269 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.15□□□□□ -1.9
HOXA9P31269 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA9P31269 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HOXA9P31269 MIR148B-201ENST00000362252 99 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RNA5SP383-201ENST00000362934 120 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 RNU6-354P-201ENST00000383862 107 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RNU6-610P-201ENST00000384264 107 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC110754.1-201ENST00000399740 601 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RNU2-6P-201ENST00000411404 190 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC008173.1-201ENST00000418901 264 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AL645937.1-202ENST00000421799 937 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXA9P31269 B3GNT2P1-201ENST00000434960 952 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC105272.1-201ENST00000438604 198 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 RPS12P18-201ENST00000442381 270 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RPL17P49-201ENST00000443728 411 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 ELOCP13-201ENST00000443934 329 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC068135.1-201ENST00000446164 246 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA9P31269 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC008379.1-201ENST00000463655 464 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 RPL31P50-201ENST00000471002 296 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC104687.1-201ENST00000485829 412 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC104629.1-201ENST00000494226 508 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC111193.1-201ENST00000504097 155 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 NAMPTP2-201ENST00000505629 1115 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC112518.2-201ENST00000508565 425 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC112206.4-201ENST00000515142 405 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC112198.4-201ENST00000515450 351 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RNU1-143P-201ENST00000516296 146 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC010306.1-201ENST00000523223 1117 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC083923.1-201ENST00000523708 376 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HOXA9P31269 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXA9P31269 TRAV37-201ENST00000553906 342 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXA9P31269 AL136370.1-201ENST00000608166 691 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AP005229.2-201ENST00000609980 697 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 U1.23-201ENST00000610293 146 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AL591516.1-201ENST00000611326 274 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 RNU1-68P-201ENST00000615382 146 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC073569.3-201ENST00000619055 682 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 U1.39-201ENST00000621562 146 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXA9P31269 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA9P31269 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HOXA9P31269 AC117529.2-201ENST00000512159 2068 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 AC011978.2-201ENST00000569835 2054 ntBASIC3.15□□□□□ -1.91
HOXA9P31269 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HOXA9P31269 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA9P31269 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA9P31269 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms