Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL356266.1-201ENST00000623311 483 ntBASIC2.28□□□□□ -2.04
VCANP13611 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.28□□□□□ -2.04
VCANP13611 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
VCANP13611 RPS29P12-201ENST00000460178 152 ntBASIC2.28□□□□□ -2.04
VCANP13611 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.28□□□□□ -2.04
VCANP13611 MIR2114-201ENST00000516645 80 ntBASIC2.28□□□□□ -2.04
VCANP13611 AC012182.1-201ENST00000570133 895 ntBASIC2.28□□□□□ -2.04
VCANP13611 AL359198.2-201ENST00000611836 194 ntBASIC2.28□□□□□ -2.04
VCANP13611 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
VCANP13611 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
VCANP13611 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
VCANP13611 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VCANP13611 Z98941.1-201ENST00000407764 100 ntBASIC2.27□□□□□ -2.05
VCANP13611 RPL38P4-201ENST00000502376 214 ntBASIC2.27□□□□□ -2.05
VCANP13611 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.27□□□□□ -2.05
VCANP13611 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.27□□□□□ -2.05
VCANP13611 FRG1BP-201ENST00000278882 761 ntBASIC2.27□□□□□ -2.05
VCANP13611 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.27□□□□□ -2.05
VCANP13611 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
VCANP13611 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.27□□□□□ -2.05
VCANP13611 RNU7-95P-201ENST00000459222 64 ntBASIC2.27□□□□□ -2.05
VCANP13611 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.27□□□□□ -2.05
VCANP13611 LRRC37A5P-203ENST00000580181 585 ntBASIC2.27□□□□□ -2.05
VCANP13611 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
VCANP13611 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
VCANP13611 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
VCANP13611 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.27□□□□□ -2.05
VCANP13611 SNORA11.4-201ENST00000408823 129 ntBASIC2.27□□□□□ -2.05
VCANP13611 AL513321.1-201ENST00000441175 761 ntBASIC2.27□□□□□ -2.05
VCANP13611 RPS7P5-201ENST00000441482 581 ntBASIC2.27□□□□□ -2.05
VCANP13611 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VCANP13611 MTND5P23-201ENST00000430812 1655 ntBASIC2.26□□□□□ -2.05
VCANP13611 DYNLL1P6-201ENST00000503440 264 ntBASIC2.26□□□□□ -2.05
VCANP13611 SCARNA16.3-201ENST00000516595 184 ntBASIC2.26□□□□□ -2.05
VCANP13611 RNA5SP102-201ENST00000516865 106 ntBASIC2.26□□□□□ -2.05
VCANP13611 CKS1BP7-201ENST00000522230 235 ntBASIC2.26□□□□□ -2.05
VCANP13611 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.26□□□□□ -2.05
VCANP13611 SETP1-201ENST00000556014 845 ntBASIC2.26□□□□□ -2.05
VCANP13611 AC005730.3-201ENST00000583067 366 ntBASIC2.26□□□□□ -2.05
VCANP13611 AC245517.5-201ENST00000611529 162 ntBASIC2.26□□□□□ -2.05
VCANP13611 AL158196.1-201ENST00000616786 434 ntBASIC2.26□□□□□ -2.05
VCANP13611 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC2.26□□□□□ -2.05
VCANP13611 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VCANP13611 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VCANP13611 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
VCANP13611 Y_RNA.458-201ENST00000384240 102 ntBASIC2.26□□□□□ -2.05
VCANP13611 AL606490.7-201ENST00000433136 191 ntBASIC2.26□□□□□ -2.05
VCANP13611 AL139811.1-201ENST00000424779 2299 ntBASIC2.26□□□□□ -2.05
VCANP13611 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
VCANP13611 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VCANP13611 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VCANP13611 AC092427.1-202ENST00000430569 476 ntBASIC2.26□□□□□ -2.05
VCANP13611 AC103975.1-201ENST00000482506 483 ntBASIC2.26□□□□□ -2.05
VCANP13611 AC011037.1-201ENST00000483964 558 ntBASIC2.26□□□□□ -2.05
VCANP13611 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC2.26□□□□□ -2.05
VCANP13611 AC083760.1-201ENST00000589621 670 ntBASIC2.26□□□□□ -2.05
VCANP13611 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
VCANP13611 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.25□□□□□ -2.05
VCANP13611 RPS20P25-201ENST00000412447 352 ntBASIC2.25□□□□□ -2.05
VCANP13611 AC017007.3-201ENST00000479865 435 ntBASIC2.25□□□□□ -2.05
VCANP13611 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.25□□□□□ -2.05
VCANP13611 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.25□□□□□ -2.05
VCANP13611 AC103968.1-201ENST00000557841 573 ntBASIC2.25□□□□□ -2.05
VCANP13611 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.25□□□□□ -2.05
VCANP13611 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
VCANP13611 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.25□□□□□ -2.05
VCANP13611 MAPK10-373ENST00000641983 6772 ntBASIC2.25□□□□□ -2.05
VCANP13611 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
VCANP13611 MIR96-201ENST00000362288 78 ntBASIC2.25□□□□□ -2.05
VCANP13611 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
VCANP13611 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC2.25□□□□□ -2.05
VCANP13611 AC090543.1-201ENST00000492168 485 ntBASIC2.25□□□□□ -2.05
VCANP13611 RPS6P4-201ENST00000494693 758 ntBASIC2.25□□□□□ -2.05
VCANP13611 AC100870.1-201ENST00000522035 505 ntBASIC2.25□□□□□ -2.05
VCANP13611 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
VCANP13611 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
VCANP13611 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
VCANP13611 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC2.24□□□□□ -2.05
VCANP13611 IGKV2D-36-201ENST00000518643 226 ntBASIC2.24□□□□□ -2.05
VCANP13611 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.24□□□□□ -2.05
VCANP13611 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.24□□□□□ -2.05
VCANP13611 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.24□□□□□ -2.05
VCANP13611 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
VCANP13611 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VCANP13611 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VCANP13611 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
VCANP13611 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC2.24□□□□□ -2.05
VCANP13611 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
VCANP13611 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
VCANP13611 LAP3P1-201ENST00000403648 294 ntBASIC2.24□□□□□ -2.05
VCANP13611 RHEBP3-201ENST00000411920 351 ntBASIC2.24□□□□□ -2.05
VCANP13611 AL158825.1-201ENST00000414735 521 ntBASIC2.24□□□□□ -2.05
VCANP13611 ATG3P1-201ENST00000419507 911 ntBASIC2.24□□□□□ -2.05
VCANP13611 MTCO2P17-201ENST00000424336 677 ntBASIC2.24□□□□□ -2.05
VCANP13611 RNU1-123P-201ENST00000458950 160 ntBASIC2.24□□□□□ -2.05
VCANP13611 RNA5SP200-201ENST00000516360 103 ntBASIC2.24□□□□□ -2.05
VCANP13611 AC123904.3-201ENST00000547218 814 ntBASIC2.24□□□□□ -2.05
VCANP13611 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.24□□□□□ -2.05
VCANP13611 AC012360.2-201ENST00000609349 391 ntBASIC2.24□□□□□ -2.05
VCANP13611 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms