Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC026412.2-201ENST00000512270 1075 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 AL022099.1-201ENST00000604551 712 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 YWHAEP7-203ENST00000622054 312 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 CYP3A51P-201ENST00000633513 256 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 AC091152.2-201ENST00000591628 2569 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 HSPA8P4-201ENST00000511877 1920 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 MTND5P28-201ENST00000438005 1594 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC88BA6NC98 FAM92A1P2-202ENST00000504766 877 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 RNA5SP385-201ENST00000515947 110 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 RN7SKP219-201ENST00000516825 296 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 AL353997.5-201ENST00000618886 171 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 CU459211.1-201ENST00000635667 749 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 RNA5SP247-201ENST00000411181 105 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 MORF4L1P6-201ENST00000418771 268 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC88BA6NC98 OR4R2P-201ENST00000530815 597 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 MTCO3P13-201ENST00000577757 781 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 MIR6715B-201ENST00000637172 77 ntBASIC3.73□□□□□ -1.81
CCDC88BA6NC98 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 AC011460.1-201ENST00000636268 1834 ntBASIC3.72□□□□□ -1.81
CCDC88BA6NC98 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 RNU1-51P-201ENST00000365345 176 ntBASIC3.72□□□□□ -1.81
CCDC88BA6NC98 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 RNA5SP344-201ENST00000411081 104 ntBASIC3.72□□□□□ -1.81
CCDC88BA6NC98 SEPT7P6-201ENST00000469999 1143 ntBASIC3.72□□□□□ -1.81
CCDC88BA6NC98 RPL38P4-201ENST00000502376 214 ntBASIC3.72□□□□□ -1.81
CCDC88BA6NC98 RN7SKP282-201ENST00000516824 299 ntBASIC3.72□□□□□ -1.81
CCDC88BA6NC98 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC88BA6NC98 AL606537.1-201ENST00000607258 2011 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AL161781.1-201ENST00000354277 403 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 DYNLT3P1-201ENST00000378574 347 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 SNORA26.9-201ENST00000391322 122 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AL121882.1-201ENST00000422893 417 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 RPL23AP42-201ENST00000471152 471 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AC004263.1-201ENST00000479327 332 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC88BA6NC98 AC066616.2-201ENST00000559334 1481 ntBASIC3.71□□□□□ -1.82
CCDC88BA6NC98 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 RNU6-1159P-201ENST00000362933 107 ntBASIC3.7□□□□□ -1.82
CCDC88BA6NC98 RNA5SP213-201ENST00000391031 106 ntBASIC3.7□□□□□ -1.82
CCDC88BA6NC98 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 ARF4P2-201ENST00000430209 526 ntBASIC3.7□□□□□ -1.82
CCDC88BA6NC98 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 AP002967.1-201ENST00000624203 539 ntBASIC3.7□□□□□ -1.82
CCDC88BA6NC98 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88BA6NC98 AL133412.1-201ENST00000380194 2992 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC88BA6NC98 RN7SKP44-201ENST00000363602 316 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 RNU1-138P-201ENST00000384093 164 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 SNORA17.3-201ENST00000391159 129 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC88BA6NC98 TRBV26-201ENST00000456572 344 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC88BA6NC98 AP000942.3-201ENST00000603702 160 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 VN1R7P-201ENST00000619242 903 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC88BA6NC98 AC092326.2-201ENST00000624772 1561 ntBASIC3.69□□□□□ -1.82
CCDC88BA6NC98 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.68□□□□□ -1.82
CCDC88BA6NC98 MIR365B-201ENST00000362317 111 ntBASIC3.68□□□□□ -1.82
CCDC88BA6NC98 SNORA48.3-201ENST00000391081 134 ntBASIC3.68□□□□□ -1.82
CCDC88BA6NC98 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 AC072039.1-201ENST00000477611 581 ntBASIC3.68□□□□□ -1.82
CCDC88BA6NC98 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CCDC88BA6NC98 OR4G2P-202ENST00000641004 1759 ntBASIC3.68□□□□□ -1.82
CCDC88BA6NC98 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC88BA6NC98 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms