Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC104619.4-201ENST00000510773 249 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RN7SKP18-201ENST00000516005 275 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-1225P-201ENST00000516336 65 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 SNORA70.18-201ENST00000516696 98 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC018630.1-201ENST00000541376 925 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 BNIP3P24-201ENST00000593398 557 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC008739.3-201ENST00000603262 127 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AP001521.1-201ENST00000609150 300 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AP000240.1-201ENST00000609910 452 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AL050303.3-201ENST00000613704 284 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC069209.1-201ENST00000619282 651 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 MIR6075-201ENST00000620782 95 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AL078595.3-201ENST00000623815 1166 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC107982.1-201ENST00000507171 1300 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC099786.3-201ENST00000565735 1410 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 ARF4P3-201ENST00000397387 509 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 DBIP2-201ENST00000419076 262 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 RPL7P44-201ENST00000424827 742 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 RPL21P66-201ENST00000426566 466 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC091286.1-201ENST00000431233 461 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AL050321.1-201ENST00000432363 400 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 RPL23AP74-201ENST00000437246 471 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AL606517.1-201ENST00000446914 387 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 RFC5P1-201ENST00000454419 874 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC092757.1-201ENST00000467293 467 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 SNRPGP3-201ENST00000469405 227 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 TRAV31-201ENST00000502780 342 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC021146.1-201ENST00000511202 716 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC008837.2-201ENST00000513076 418 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 RN7SKP244-201ENST00000516513 307 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 SNORA31.20-201ENST00000517111 133 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-1073P-201ENST00000517182 106 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AP001636.2-201ENST00000525517 696 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 MIR4738-201ENST00000579134 87 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC020914.6-201ENST00000594327 272 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 BNIP3P33-201ENST00000598912 569 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC010738.1-201ENST00000604970 987 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC124312.4-201ENST00000605533 310 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC016877.3-201ENST00000606778 504 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 VIS1.1-201ENST00000610517 203 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AL049780.3-201ENST00000624612 1583 ntBASIC3.37□□□□□ -1.87
ATG4BQ9Y4P1 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 SNORA71.3-201ENST00000362582 128 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 RNA5SP235-201ENST00000365411 114 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 Y_RNA.408-201ENST00000383987 102 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 SNORD51-201ENST00000384320 80 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-1242P-201ENST00000391052 103 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AC016769.3-201ENST00000396562 315 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AL356320.2-201ENST00000417263 507 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 VN1R10P-201ENST00000447106 875 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AC007327.1-201ENST00000447461 264 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AL358232.1-201ENST00000448030 501 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 MTND2P19-201ENST00000449129 1012 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 USP9YP34-201ENST00000453983 808 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 HMGB1P25-201ENST00000468402 607 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 AC011979.1-201ENST00000472300 483 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 SETP14-201ENST00000497538 873 ntBASIC3.36□□□□□ -1.87
ATG4BQ9Y4P1 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms