Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC002076.2-201ENST00000617362 122 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC011330.2-201ENST00000621680 635 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 MIR492-201ENST00000638676 116 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 AC006927.4-201ENST00000639187 543 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 OR5BE1P-202ENST00000641168 1176 ntBASIC3.22□□□□□ -1.89
FOXA2Q9Y261 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
FOXA2Q9Y261 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RNU6-289P-201ENST00000364093 107 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC068538.1-201ENST00000376856 336 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 MIR493-201ENST00000385254 89 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 HSPE1P12-201ENST00000412576 301 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RPL7AP73-201ENST00000413490 353 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 HMGB1P37-201ENST00000439613 609 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RPS4XP4-201ENST00000443195 763 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 MTND1P31-201ENST00000449206 961 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RPS7P7-201ENST00000463499 571 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC026801.2-201ENST00000515352 425 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RNU6-528P-201ENST00000516926 100 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RNA5SP143-201ENST00000516936 115 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RNU6-714P-201ENST00000516963 103 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 MIR2116-201ENST00000517221 80 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 RPL12P22-201ENST00000519073 490 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 FAM60DP-201ENST00000524174 632 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL163153.1-201ENST00000554223 283 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL590392.1-201ENST00000604960 446 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AL050303.3-201ENST00000613704 284 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC002550.2-201ENST00000621246 394 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AP002782.1-201ENST00000623107 614 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 NCAPGP1-201ENST00000505112 1814 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 AC009812.4-201ENST00000569134 1805 ntBASIC3.21□□□□□ -1.9
FOXA2Q9Y261 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA2Q9Y261 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC090740.1-201ENST00000623193 2262 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL121657.1-201ENST00000327215 531 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 MIR513B-201ENST00000385136 84 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL590704.1-201ENST00000402856 794 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL356421.1-201ENST00000403255 413 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 FAT1P1-201ENST00000406588 507 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 RPS3AP24-201ENST00000407896 734 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 RNU6-757P-201ENST00000410334 100 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AMD1P2-201ENST00000412936 992 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 HMGB1P49-201ENST00000418882 569 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 RPL27AP8-201ENST00000424277 446 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 RSL24D1P6-201ENST00000426934 401 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 HIGD1AP4-201ENST00000430194 280 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC083863.1-201ENST00000438811 231 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 EEF1E1P1-201ENST00000446998 430 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 RNA5SP310-201ENST00000459084 116 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC020699.1-201ENST00000505161 445 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 BTF3L4P4-201ENST00000506381 449 ntBASIC3.2□□□□□ -1.9
FOXA2Q9Y261 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms