Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 Y_RNA.25-201ENST00000362528 102 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RNU6-582P-201ENST00000362989 107 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RNU6-456P-201ENST00000384493 107 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 SNORA66-201ENST00000384792 133 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RNY4P36-201ENST00000391116 96 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 U3.36-201ENST00000408418 213 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 SNORA77-201ENST00000408716 125 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC127391.1-201ENST00000411737 98 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC114814.2-201ENST00000419195 485 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RPS29P9-201ENST00000440360 171 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 BNIP3P2-201ENST00000441221 577 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RPL32P28-201ENST00000443577 397 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC243772.1-201ENST00000451620 410 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 MTATP8P1-201ENST00000467115 207 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC010301.1-201ENST00000473936 355 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RPS18P6-201ENST00000476880 458 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 HMGB1P30-201ENST00000492455 606 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RN7SL244P-201ENST00000493405 297 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 HIGD1AP14-201ENST00000507617 282 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 SNORA25.17-201ENST00000517184 124 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL163153.1-201ENST00000554223 283 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL161670.1-201ENST00000554348 137 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 RPL21P7-201ENST00000557463 483 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 MIR4489-201ENST00000578869 62 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 SUMO2P15-201ENST00000604285 278 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 BCRP9-201ENST00000605312 388 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC005014.2-201ENST00000607795 599 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL133173.2-201ENST00000614270 90 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AL133216.2-202ENST00000634512 349 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 MAPK10-286ENST00000641208 8747 ntBASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC39Q9UFE4 GTF2H2B-203ENST00000508065 1432 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 RIOK3P1-201ENST00000418778 1528 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC104118.1-201ENST00000607625 1589 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC073343.1-201ENST00000328239 651 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 RNU1-35P-201ENST00000362782 153 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 Y_RNA.149-201ENST00000363558 117 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 RN7SKP106-201ENST00000410832 272 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 RPL21P110-201ENST00000433345 446 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AL450023.3-201ENST00000440592 271 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 RPS24P6-201ENST00000452670 400 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 HMGB1P4-201ENST00000455362 567 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 Vault.3-201ENST00000516676 95 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 SNORA48.10-201ENST00000516965 160 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 IGKV2D-10-201ENST00000520194 281 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 HMGB1P41-201ENST00000520234 440 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC023442.1-201ENST00000531247 422 ntBASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC39Q9UFE4 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms