Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 SNORA31.3-201ENST00000516029 96 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 TRIM77BP-201ENST00000524985 1119 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 IMMP1LP2-201ENST00000552954 492 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RN7SL652P-201ENST00000577769 300 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC060780.2-201ENST00000589047 198 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC006504.6-201ENST00000590142 199 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 SNRPGP17-201ENST00000603780 214 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ATP5A1P2-202ENST00000616464 443 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC022418.1-201ENST00000624118 445 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC083843.2-201ENST00000568248 6253 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC232271.1-201ENST00000602455 2715 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC004925.1-201ENST00000624256 2706 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 SAMMSON-226ENST00000642089 1582 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC239868.2-201ENST00000564237 4527 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC006484.1-201ENST00000435086 1884 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RNU6-1188P-201ENST00000363795 107 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RNA5SP122-201ENST00000384457 108 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 MIR323B-201ENST00000385269 82 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 MIR130A-201ENST00000385274 89 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RNU6-308P-201ENST00000390957 107 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC097374.1-203ENST00000400783 485 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC080125.1-201ENST00000414888 684 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RPL21P90-201ENST00000415692 466 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RPL7P10-201ENST00000417407 739 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AL590632.1-201ENST00000424289 371 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AL451062.2-201ENST00000427515 271 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AL389925.1-201ENST00000432257 728 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 SNAP23P1-201ENST00000433229 246 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 HMGB3P22-202ENST00000451823 572 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC144530.1-201ENST00000452862 555 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 MTCO3P10-201ENST00000455912 772 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 SNORD108-201ENST00000459332 71 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC018638.3-201ENST00000461273 132 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC130509.1-201ENST00000464158 433 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC108860.1-201ENST00000484521 383 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AP000648.1-201ENST00000529682 397 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 COX6CP7-201ENST00000597056 208 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC010378.1-201ENST00000619270 362 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC022400.9-201ENST00000623633 273 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 AC104118.1-201ENST00000607625 1589 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 Z73965.1-201ENST00000623412 2297 ntBASIC4.47□□□□□ -1.69
CCDC140Q96MF4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC140Q96MF4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CCDC140Q96MF4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.46□□□□□ -1.69
CCDC140Q96MF4 DDX18P3-201ENST00000404856 2007 ntBASIC4.46□□□□□ -1.69
CCDC140Q96MF4 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.46□□□□□ -1.69
CCDC140Q96MF4 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms