Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 BX322784.1-201ENST00000455793 1077 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC087312.1-201ENST00000471411 480 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 TMED11P-201ENST00000479478 690 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC034159.1-201ENST00000513885 583 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC022878.1-201ENST00000530684 149 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC022882.1-201ENST00000532142 501 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC024224.1-201ENST00000538284 609 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC009063.1-201ENST00000563342 702 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC090312.1-201ENST00000580637 348 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC112191.3-201ENST00000604371 277 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 FAM27D1-201ENST00000612308 341 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AC000123.2-201ENST00000623124 461 ntBASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SMC1BQ8NDV3 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 RN7SKP16-201ENST00000410180 299 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 RNU2-21P-201ENST00000410368 188 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 MTCO1P17-201ENST00000411522 491 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC008481.1-201ENST00000463278 396 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 RPS27AP17-201ENST00000463344 455 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC112204.1-201ENST00000502591 103 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC093767.1-201ENST00000504523 156 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC074250.1-201ENST00000511117 192 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 RNA5SP519-201ENST00000516480 119 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 OR5M7P-201ENST00000526140 972 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC087883.1-201ENST00000551882 391 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 MIR4512-201ENST00000583257 77 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC005255.1-201ENST00000593748 216 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AC013476.2-201ENST00000614456 459 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AL445264.1-201ENST00000621719 171 ntBASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SMC1BQ8NDV3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 ZNF33BP1-201ENST00000452497 1834 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 RNU6-769P-201ENST00000384407 104 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 Y_RNA.582-201ENST00000391023 95 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 HMGB3P23-201ENST00000414981 585 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 RPL35AP21-201ENST00000437667 333 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AL512326.1-201ENST00000443050 721 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC002381.1-201ENST00000447049 280 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 PRDX3P3-201ENST00000447765 522 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC012671.1-201ENST00000451912 203 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC023424.2-201ENST00000493479 777 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 RNU1-103P-201ENST00000516502 125 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 RNA5SP360-201ENST00000516555 118 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 MTND4LP26-201ENST00000518144 282 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC105031.1-201ENST00000518550 476 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC137800.2-201ENST00000574375 120 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 MIR4801-201ENST00000582704 82 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC103710.1-201ENST00000610003 901 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AP001506.1-201ENST00000615444 211 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AL354798.1-201ENST00000622505 329 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 MIR6500-201ENST00000622700 86 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AL034408.1-202ENST00000636088 415 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 AC093536.2-201ENST00000565257 1406 ntBASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms